BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0462000 Os05g0462000|Os05g0462000
         (102 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0462000  Conserved hypothetical protein 1589, plant fam...   151   1e-37
Os01g0837600  Conserved hypothetical protein 1589, plant fam...    91   2e-19
Os03g0280400  Conserved hypothetical protein 1589, plant fam...    74   3e-14

>Os05g0462000 Conserved hypothetical protein 1589, plant family protein
          Length = 102

 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 73/85 (85%)

Query: 1  MGDSSSSASYIRMVHHLIEKCICFNLNKEECMEALEKHANINPVVTSTVWXXXXXXXXXX 60
          MGDSSSSASYIRMVHHLIEKCICFNLNKEECMEALEKHANINPVVTSTVW          
Sbjct: 1  MGDSSSSASYIRMVHHLIEKCICFNLNKEECMEALEKHANINPVVTSTVWKELEKENKEF 60

Query: 61 XXTYNKDRAERNIEAETMQRIQKML 85
            TYNKDRAERNIEAETMQRIQKML
Sbjct: 61 FETYNKDRAERNIEAETMQRIQKML 85



>Os01g0837600 Conserved hypothetical protein 1589, plant family protein
          Length = 102

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 46/65 (70%)

Query: 5  SSSASYIRMVHHLIEKCICFNLNKEECMEALEKHANINPVVTSTVWXXXXXXXXXXXXTY 64
          SS ASYIR+V HLIEKCIC+N+NKEECME LEKHANI PV+TSTVW            TY
Sbjct: 12 SSPASYIRLVQHLIEKCICYNMNKEECMETLEKHANIKPVITSTVWKELEKENSEFFATY 71

Query: 65 NKDRA 69
           K + 
Sbjct: 72 KKGQG 76



>Os03g0280400 Conserved hypothetical protein 1589, plant family protein
          Length = 78

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1  MGDSSSSASYIRMVHHLIEKCICFNLNKEECMEALEKHANINPVVTSTVWXXXXXXXXXX 60
          +GD S  ASYI MV HLIEKC+ F ++ EECME L K A++ PVVTSTVW          
Sbjct: 3  LGDDSP-ASYIHMVQHLIEKCMTFGMSMEECMETLSKRADVQPVVTSTVWKELEKENKEF 61

Query: 61 XXTYNKDRAERN 72
             Y + R+E+ 
Sbjct: 62 FDKYKQLRSEKG 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.125    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,016,081
Number of extensions: 50909
Number of successful extensions: 102
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 3
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)