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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0280400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein 1589, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.52 (0.104) R2 : 0.521
β1 : -3.46 (0.394) R2dD : 0.0957 R2D : 0.0233
β2 : 3.27 (0.252) R2dC : 0.168 R2C : 0.104
β3 : 4.16 (0.373) R2dE : 0.152 R2E : -0.0861
β4 : -4.08 (1.01) R2dD*C : 0.0195 R2D*C : -0.0405
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 3.06 (0.229) R2dN8 : 0.267 R2N8 : 0.141
σ : 1.94
deviance : 1730.75
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_____
C
peak time of C : 14.2
E
wheather : precipitation
threshold : 0.4006
memory length : 13081
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 17.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1722.98 1.95 5.48 -3.33 3.21 3.26 -4.33 7.5 2.88 14.2 0.2594 10457 17.1 --
1730.75 1.94 5.52 -3.46 3.27 4.16 -4.08 -- 3.06 14.2 0.4006 13081 17.1 --
1783.28 1.97 5.48 -3.68 3.26 3.99 -- 4.61 2.98 14.5 0.3092 10456 14.4 --
1781.79 1.97 5.5 -4.04 3.2 4.15 -- -- 2.97 14.5 0.3832 13032 11 --
1942.47 2.05 5.45 -3.34 -- 6.9 -- 3.95 3.05 -- -1.515 11591 15.5 --
2197.45 2.2 5.69 -2.42 3.22 -- -4.58 -- 2.37 14.3 -- -- -- --
2271.05 2.23 5.71 -2.55 3.25 -- -- -- 2.35 14.6 -- -- -- --
1852.7 2 5.58 -3.1 -- 7.14 -- -- 3.03 -- -1.676 14472 15.9 --
2040.18 2.1 5.4 -- 3.11 4.67 -- -- 3.52 14 -0.03823 13579 17.8 --
2890.1 2.51 5.73 -2.69 -- -- -- -- 2.27 -- -- -- -- --
2442.54 2.31 5.65 -- 3.3 -- -- -- 2.63 14.6 -- -- -- --
2038.12 2.1 5.35 -- -- 5.89 -- -- 3.33 -- -0.2943 16234 18.6 --
3080.83 2.59 5.66 -- -- -- -- -- 2.56 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1527.08 radiation 40 43200 > th dose dependent rect. 10 1
3 1533.35 radiation 40 43200 > th dose dependent rect. 8 3
22 1544.02 radiation 40 43200 < th dose independent rect. 1 10
29 1544.51 radiation 40 43200 < th dose independent rect. 21 14
32 1544.55 radiation 40 43200 < th dose independent rect. 17 18
59 1549.46 radiation 40 43200 < th dose independent sin 11 NA
65 1553.60 radiation 40 43200 > th dose dependent sin 11 NA
86 1558.35 radiation 40 43200 < th dose independent rect. 10 1
124 1564.64 radiation 20 43200 < th dose independent rect. 17 16
127 1565.39 radiation 40 43200 > th dose independent rect. 10 1
128 1565.61 radiation 10 43200 < th dose independent rect. 17 18
147 1566.40 radiation 20 43200 < th dose independent rect. 1 8
155 1566.85 radiation 20 43200 < th dose independent rect. 21 12
192 1570.99 radiation 20 43200 < th dose independent sin 11 NA
202 1574.69 radiation 40 43200 < th dose independent rect. 14 6
214 1574.99 radiation 40 43200 < th dose independent rect. 14 8
312 1584.22 radiation 10 43200 > th dose dependent rect. 5 2
439 1587.48 humidity 80 43200 < th dose dependent rect. 20 11
467 1590.21 radiation 40 43200 > th dose dependent rect. 14 1
493 1591.28 radiation 40 43200 > th dose dependent rect. 14 18
498 1591.60 wind 9 14400 > th dose dependent rect. 18 19
728 1600.22 radiation 20 43200 < th dose independent rect. 15 5
731 1600.36 radiation 20 43200 < th dose independent rect. 15 7
773 1601.03 radiation 40 43200 > th dose independent rect. 7 4
805 1602.44 wind 9 14400 < th dose independent rect. 18 19
839 1604.19 humidity 80 43200 < th dose dependent rect. 4 1
932 1607.86 radiation 40 43200 < th dose independent rect. 1 19
934 1607.89 radiation 40 43200 < th dose independent rect. 3 17
991 1608.06 radiation 40 43200 < th dose independent no NA NA