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Os05g0462000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein 1589, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0525) R2 : 0.696
β1 : -3.82 (0.209) R2dD : 0.278 R2D : 0.0874
β2 : 2.46 (0.125) R2dC : 0.259 R2C : 0.271
β3 : -5.55 (0.285) R2dE : 0.323 R2E : 0.115
β4 : -2.62 (0.487) R2dD*C : 0.0189 R2D*C : 0.0311
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.038 (0.117) R2dN8 : 9.85e-05 R2N8 : 0.0025
σ : 0.967
deviance : 430.68
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C
peak time of C : 10.2
E
wheather : temperature
threshold : 18.8
memory length : 4313
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.13
open length of G : 0.133

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
427.57 0.972 10.3 -3.61 2.45 -5.99 -2.62 -1.72 0.0591 10.2 18.75 4425 6.08 0.177
430.68 0.967 10.3 -3.82 2.46 -5.55 -2.62 -- 0.038 10.2 18.8 4313 6.13 0.133
453.68 0.992 10.3 -3.73 2.45 -6.16 -- -1.86 0.0524 10.1 18.6 4424 6.11 0.156
457.11 0.996 10.4 -3.89 2.47 -5.57 -- -- 0.0162 10.1 18.8 4317 6.13 0.1
821.54 1.33 10.4 -3.76 -- -6.27 -- -1.79 0.047 -- 18.6 4209 6.1 0.0166
790.24 1.32 10.2 -2.13 2.5 -- -2.75 -- 0.765 10.1 -- -- -- --
819.8 1.34 10.2 -2.24 2.52 -- -- -- 0.757 10 -- -- -- --
825.05 1.34 10.4 -3.94 -- -5.79 -- -- 0.0183 -- 18.7 4235 6.1 0.028
786.05 1.31 10.3 -- 2.5 -3.88 -- -- 0.566 10 18.17 4205 5.87 0.133
1200.82 1.62 10.3 -2.27 -- -- -- -- 0.755 -- -- -- -- --
952.06 1.44 10.1 -- 2.52 -- -- -- 1.01 10.1 -- -- -- --
1149.51 1.58 10.3 -- -- -3.56 -- -- 0.719 -- 18.2 4218 5.78 0.0167
1336.86 1.71 10.2 -- -- -- -- -- 1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 402.88 humidity 80 43200 < th dose dependent rect. 18 13
3 403.86 wind 9 14400 < th dose independent rect. 15 21
7 405.94 wind 7 14400 > th dose dependent rect. 15 22
9 406.14 humidity 80 43200 < th dose dependent rect. 19 5
12 407.12 humidity 80 43200 < th dose dependent sin 11 NA
17 408.25 wind 9 14400 > th dose independent rect. 15 21
27 410.86 humidity 70 43200 < th dose independent rect. 19 2
30 411.39 humidity 70 43200 < th dose independent rect. 19 18
34 411.78 humidity 60 43200 > th dose independent rect. 18 20
35 411.98 humidity 80 43200 < th dose dependent rect. 18 17
40 412.88 humidity 60 43200 > th dose independent rect. 20 18
58 414.85 humidity 80 43200 < th dose dependent rect. 20 1
61 414.94 humidity 70 43200 < th dose independent sin 7 NA
78 416.62 wind 7 14400 > th dose dependent rect. 9 23
80 416.67 wind 7 14400 > th dose dependent no NA NA
83 416.90 wind 7 14400 > th dose dependent rect. 1 23
85 417.05 wind 7 14400 > th dose dependent rect. 7 23
86 417.06 wind 7 14400 > th dose dependent rect. 22 23
103 417.86 wind 7 14400 > th dose dependent rect. 18 23
114 418.14 humidity 70 43200 > th dose independent rect. 19 2
125 418.74 humidity 50 43200 < th dose independent rect. 16 2
126 418.83 humidity 50 43200 > th dose independent rect. 16 2
141 419.26 humidity 70 43200 > th dose independent sin 7 NA
150 419.44 wind 9 14400 > th dose independent rect. 18 19
207 421.66 humidity 80 43200 < th dose dependent rect. 10 1
228 422.13 wind 7 14400 > th dose independent rect. 10 22
253 423.24 wind 7 14400 > th dose independent rect. 22 22
273 423.89 wind 7 14400 > th dose independent rect. 1 23
291 424.25 wind 7 14400 < th dose independent rect. 11 21
304 424.70 wind 7 14400 > th dose independent no NA NA
310 424.86 humidity 70 43200 > th dose independent sin 11 NA
311 424.86 wind 7 14400 > th dose independent rect. 1 19
313 424.91 wind 7 14400 > th dose independent rect. 7 23
328 425.24 wind 9 14400 < th dose independent sin 16 NA
397 426.62 humidity 70 43200 < th dose independent sin 11 NA
400 426.72 wind 9 14400 < th dose independent rect. 14 17
403 426.77 wind 7 14400 < th dose independent rect. 1 23
410 427.00 wind 7 14400 < th dose independent rect. 22 22
412 427.06 wind 9 14400 < th dose independent rect. 18 19
445 427.60 radiation 20 43200 < th dose independent rect. 16 15
446 427.61 wind 7 14400 < th dose independent rect. 1 19
474 428.11 wind 7 14400 < th dose independent no NA NA
496 428.38 wind 1 43200 > th dose independent rect. 10 3
503 428.48 wind 7 14400 < th dose independent rect. 7 23
509 428.55 humidity 60 43200 < th dose dependent rect. 17 1
575 429.68 wind 7 14400 > th dose dependent rect. 15 15
608 430.05 wind 7 14400 > th dose dependent sin 16 NA
665 430.82 wind 1 43200 < th dose dependent rect. 10 1
675 430.95 wind 9 14400 > th dose independent sin 15 NA
754 431.91 wind 9 14400 < th dose independent rect. 15 5
770 432.12 humidity 70 43200 > th dose independent rect. 16 16
790 432.47 wind 9 14400 > th dose independent rect. 14 16
799 432.59 humidity 70 43200 < th dose dependent rect. 10 22
813 432.76 humidity 70 43200 > th dose independent rect. 18 13
848 433.19 humidity 80 43200 < th dose dependent no NA NA
923 433.94 wind 9 14400 < th dose independent rect. 14 11
983 434.47 humidity 80 43200 < th dose dependent rect. 3 23
994 434.57 humidity 70 43200 < th dose independent rect. 16 16