BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0455600 Os05g0455600|AK060152
         (209 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0455600  Prenylated rab acceptor PRA1 family protein         393   e-110
Os01g0847900  Prenylated rab acceptor PRA1 family protein         343   5e-95

>Os05g0455600 Prenylated rab acceptor PRA1 family protein
          Length = 209

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/209 (93%), Positives = 196/209 (93%)

Query: 1   MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNYXX 60
           MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNY  
Sbjct: 1   MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNYFI 60

Query: 61  XXXXXXXXXXXWKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
                      WKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP
Sbjct: 61  LIMFILGIGFIWKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120

Query: 121 ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH 180
           ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH
Sbjct: 121 ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209
           ASFRTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209



>Os01g0847900 Prenylated rab acceptor PRA1 family protein
          Length = 209

 Score =  343 bits (880), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 175/209 (83%), Positives = 186/209 (88%)

Query: 1   MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNYXX 60
           MDWS+VTAEDLVDALREVDWSTPPRPV EFFSRFT PRSYSKWTSRLKCNLYYYRTNY  
Sbjct: 1   MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI 60

Query: 61  XXXXXXXXXXXWKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
                       KPV+ILAAF TG+SIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP
Sbjct: 61  LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120

Query: 121 ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH 180
           + PV+RGRPSSKRSIHICGRPRW+FV+LFS VSC LW+TSCSLLTVLWAL++ + ATLLH
Sbjct: 121 LRPVIRGRPSSKRSIHICGRPRWVFVVLFSVVSCFLWMTSCSLLTVLWALIVGLLATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209
           ASFRTPNLKARLNTFREEFRAVWRNYSE 
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEF 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.136    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,206,364
Number of extensions: 269428
Number of successful extensions: 1043
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1042
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 154 (63.9 bits)