Os05g0455600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prenylated rab acceptor PRA1 family protein.
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Os05g0455600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prenylated rab acceptor PRA1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.04 | 0.644 | 9.84 | -0.498 | 0.994 | 1.56 | -0.173 | 1.63 | -0.885 | 10.8 | 69.11 | 6866 | -- | -- |
| 191.8 | 0.645 | 9.83 | -0.566 | 1.01 | 1.65 | -0.236 | -- | -0.915 | 10.8 | 69 | 6916 | -- | -- |
| 188.13 | 0.639 | 9.84 | -0.506 | 1.01 | 1.57 | -- | 1.7 | -0.882 | 10.8 | 69.22 | 6820 | -- | -- |
| 192.04 | 0.645 | 9.83 | -0.59 | 0.983 | 1.63 | -- | -- | -0.915 | 10.9 | 69 | 6921 | -- | -- |
| 238.35 | 0.719 | 9.87 | -0.504 | -- | 1.48 | -- | 1.18 | -0.93 | -- | 69.94 | 7337 | -- | -- |
| 232.25 | 0.714 | 9.78 | -0.72 | 0.88 | -- | -0.342 | -- | -0.683 | 10.7 | -- | -- | -- | -- |
| 232.74 | 0.714 | 9.78 | -0.734 | 0.881 | -- | -- | -- | -0.684 | 10.7 | -- | -- | -- | -- |
| 240.43 | 0.722 | 9.85 | -0.53 | -- | 1.58 | -- | -- | -0.873 | -- | 69 | 7330 | -- | -- |
| 200.93 | 0.66 | 9.82 | -- | 0.948 | 1.7 | -- | -- | -0.872 | 11 | 70 | 7016 | -- | -- |
| 280.67 | 0.783 | 9.8 | -0.751 | -- | -- | -- | -- | -0.689 | -- | -- | -- | -- | -- |
| 246.93 | 0.735 | 9.76 | -- | 0.887 | -- | -- | -- | -0.602 | 10.7 | -- | -- | -- | -- |
| 248.52 | 0.734 | 9.84 | -- | -- | 1.68 | -- | -- | -0.837 | -- | 68.01 | 7334 | -- | -- |
| 295.54 | 0.802 | 9.78 | -- | -- | -- | -- | -- | -0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.45 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 14 | 187.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 15 | 187.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 16 | 187.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 18 | 187.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 19 | 187.98 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 39 | 189.08 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 50 | 189.90 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 69 | 190.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 70 | 190.69 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 78 | 190.88 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 79 | 190.89 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 88 | 191.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 89 | 191.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 92 | 191.08 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 103 | 191.26 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 6 |
| 107 | 191.29 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 20 |
| 116 | 191.40 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 119 | 191.41 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 14 |
| 124 | 191.42 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 7 |
| 141 | 191.47 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 22 |
| 159 | 191.59 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 186 | 191.63 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 190 | 191.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 191 | 191.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 193 | 191.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 196 | 191.64 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 202 | 191.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 204 | 191.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 214 | 191.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 218 | 191.73 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 224 | 191.77 | humidity | 60.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 225 | 191.77 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 228 | 191.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 230 | 191.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 251 | 191.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 270 | 191.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 306 | 191.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 308 | 191.92 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 310 | 191.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 311 | 191.93 | humidity | 60.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 330 | 192.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 331 | 192.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 338 | 192.07 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 343 | 192.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 345 | 192.10 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 21 |
| 387 | 192.28 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 434 | 192.39 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 470 | 192.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 472 | 192.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 475 | 192.51 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 491 | 192.52 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 517 | 192.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 524 | 192.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 555 | 192.62 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 585 | 192.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 601 | 192.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 606 | 192.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 623 | 192.68 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 647 | 192.75 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 703 | 192.75 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 22 |
| 728 | 192.76 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 733 | 192.76 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 915 | 192.94 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 920 | 192.96 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 958 | 193.06 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 5 |