BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0455600 Os05g0455600|AK060152
(209 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11397.1 | chr3:3576173-3577765 FORWARD LENGTH=210 283 3e-77
AT5G05987.1 | chr5:1804881-1806559 FORWARD LENGTH=210 282 1e-76
AT5G02040.1 | chr5:401163-402471 FORWARD LENGTH=210 274 2e-74
>AT3G11397.1 | chr3:3576173-3577765 FORWARD LENGTH=210
Length = 209
Score = 283 bits (725), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/209 (64%), Positives = 162/209 (77%)
Query: 1 MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNYXX 60
MDW +V AED+++ALREV+WS PR + EFFSRF PRS+SKW SRLKCNLYYYRTNY
Sbjct: 1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFI 60
Query: 61 XXXXXXXXXXXWKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
+P+AIL A +T +S+AFLNDSFA TFNEK+ RT+R FSPHLAAKMRPP
Sbjct: 61 LFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPP 120
Query: 121 ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH 180
PV+RGR +++++++ICG+PR +FVLL S +LW TSC LL VL+AL A+ LLH
Sbjct: 121 HMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLH 180
Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209
AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASLRTPNLKARLNTFREEFRAVWRNYSEL 209
>AT5G05987.1 | chr5:1804881-1806559 FORWARD LENGTH=210
Length = 209
Score = 282 bits (721), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 129/209 (61%), Positives = 163/209 (77%)
Query: 1 MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNYXX 60
MDW V AED+++ALREV+WSTPPR EFFSRF PRS+SKW SRLKCNLYYYRTNY
Sbjct: 1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFI 60
Query: 61 XXXXXXXXXXXWKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
+P+A++ A +T +SIAFLNDSFA +FNEK RT+R FSPH+AAKMRPP
Sbjct: 61 LVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPP 120
Query: 121 ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH 180
PV+RGR ++++++++CG+PRW+FV+ F S ++W +SC LL VL+ALL ++ ++H
Sbjct: 121 HMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVH 180
Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209
AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASIRTPNLKARLNTFREEFRAVWRNYSEL 209
>AT5G02040.1 | chr5:401163-402471 FORWARD LENGTH=210
Length = 209
Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/209 (69%), Positives = 163/209 (77%)
Query: 1 MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNYXX 60
MDW VT +DL DALREVDWS+PPRP EFFSRFTVP+S KW SRLKCNLYYYRTNY
Sbjct: 1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFI 60
Query: 61 XXXXXXXXXXXWKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
+P+AI AA +T +S+AFLNDSFA +F+EK TRTVR+FSP LAAKMRPP
Sbjct: 61 MIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPP 120
Query: 121 ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH 180
+TPV RGRPSSKR+IH+CG+PRW+FVL S VS LW S LL V ALLIA AT+LH
Sbjct: 121 LTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILH 180
Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209
AS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 181 ASLRTPNLKARFNTFREEFRAVWRNYSEI 209
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.136 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,437,153
Number of extensions: 161079
Number of successful extensions: 497
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)