Os01g0847900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prenylated rab acceptor PRA1 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0847900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Prenylated rab acceptor PRA1 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.28 | 0.343 | 8.24 | -0.715 | 1.72 | -1.13 | 0.787 | -1.11 | -0.0386 | 8.33 | 27.26 | 7 | -- | -- |
| 55.28 | 0.346 | 8.26 | -0.88 | 1.72 | -1.1 | 0.932 | -- | -0.0831 | 8.31 | 27.83 | 6 | -- | -- |
| 55.07 | 0.346 | 8.24 | -0.652 | 1.72 | -1.15 | -- | -1.36 | -0.0311 | 8.31 | 26.9 | 6 | -- | -- |
| 58.2 | 0.355 | 8.26 | -0.875 | 1.72 | -1.09 | -- | -- | -0.0823 | 8.32 | 27.48 | 6 | -- | -- |
| 214.56 | 0.686 | 8.29 | -0.698 | -- | -1.58 | -- | -1.65 | -0.0645 | -- | 25.1 | 5 | -- | -- |
| 71.65 | 0.397 | 8.21 | -0.649 | 1.78 | -- | 1.04 | -- | 0.156 | 9.09 | -- | -- | -- | -- |
| 75.4 | 0.407 | 8.21 | -0.613 | 1.78 | -- | -- | -- | 0.156 | 9.03 | -- | -- | -- | -- |
| 219.22 | 0.693 | 8.32 | -0.941 | -- | -1.45 | -- | -- | -0.127 | -- | 25.42 | 3 | -- | -- |
| 76.43 | 0.409 | 8.23 | -- | 1.73 | -0.745 | -- | -- | 0.0818 | 8.6 | 27.29 | 2 | -- | -- |
| 257.24 | 0.749 | 8.26 | -0.616 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 85.32 | 0.432 | 8.19 | -- | 1.78 | -- | -- | -- | 0.224 | 9.06 | -- | -- | -- | -- |
| 240.87 | 0.725 | 8.29 | -- | -- | -1.14 | -- | -- | 0.0232 | -- | 26.09 | 5 | -- | -- |
| 267.26 | 0.763 | 8.24 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 5 | 52.03 | temperature | 10 | 10 | > th | dose dependent | sin | 6 | NA |
| 7 | 52.27 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 21 | 53.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 39 | 53.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 51 | 54.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 53 | 54.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 69 | 54.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 71 | 54.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 74 | 54.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 89 | 54.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 103 | 54.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 111 | 55.04 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 130 | 55.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 135 | 55.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 141 | 55.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 143 | 55.34 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 20 |
| 157 | 55.46 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 161 | 55.47 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 181 | 55.59 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 183 | 55.60 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 15 |
| 197 | 55.69 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 22 |
| 204 | 55.77 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 16 |
| 223 | 55.88 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 232 | 55.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 241 | 56.05 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 243 | 56.06 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 284 | 56.25 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 305 | 56.35 | temperature | 25 | 30 | < th | dose independent | rect. | 22 | 22 |
| 347 | 56.48 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 20 |
| 428 | 56.79 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 20 |
| 458 | 56.87 | temperature | 25 | 30 | < th | dose independent | sin | 7 | NA |
| 590 | 57.29 | temperature | 25 | 30 | < th | dose independent | rect. | 12 | 22 |
| 602 | 57.32 | temperature | 25 | 30 | > th | dose independent | sin | 6 | NA |
| 626 | 57.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 631 | 57.39 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 23 |
| 666 | 57.48 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 678 | 57.53 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 687 | 57.56 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 725 | 57.66 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 735 | 57.67 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 782 | 57.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 802 | 57.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 831 | 57.84 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 859 | 57.88 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 866 | 57.90 | radiation | 10 | 30 | < th | dose dependent | sin | 2 | NA |
| 878 | 57.93 | temperature | 25 | 30 | < th | dose independent | rect. | 9 | 23 |
| 881 | 57.94 | temperature | 25 | 30 | < th | dose independent | no | NA | NA |
| 894 | 57.96 | temperature | 25 | 30 | < th | dose independent | rect. | 17 | 23 |
| 901 | 57.97 | temperature | 25 | 30 | < th | dose independent | rect. | 15 | 23 |
| 902 | 57.97 | temperature | 25 | 30 | < th | dose independent | rect. | 19 | 23 |
| 919 | 58.00 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 21 |
| 923 | 58.01 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 17 |
| 940 | 58.06 | temperature | 25 | 30 | < th | dose independent | rect. | 7 | 23 |