BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0847900 Os01g0847900|AK059798
         (209 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0847900  Prenylated rab acceptor PRA1 family protein         393   e-110
Os05g0455600  Prenylated rab acceptor PRA1 family protein         367   e-102

>Os01g0847900 Prenylated rab acceptor PRA1 family protein
          Length = 209

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/209 (93%), Positives = 196/209 (93%)

Query: 1   MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI 60
           MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI
Sbjct: 1   MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI 60

Query: 61  LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
           LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP
Sbjct: 61  LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120

Query: 121 LRPVIRGRPSSKRSIHICGRPRWXXXXXXXXXXXXXWMTSCSLLTVLWALIVGLLATLLH 180
           LRPVIRGRPSSKRSIHICGRPRW             WMTSCSLLTVLWALIVGLLATLLH
Sbjct: 121 LRPVIRGRPSSKRSIHICGRPRWVFVVLFSVVSCFLWMTSCSLLTVLWALIVGLLATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEF 209
           ASFRTPNLKARLNTFREEFRAVWRNYSEF
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEF 209



>Os05g0455600 Prenylated rab acceptor PRA1 family protein
          Length = 209

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/209 (84%), Positives = 188/209 (89%)

Query: 1   MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI 60
           MDWS+VTAEDLVDALREVDWSTPPRPV EFFSRFT PRSYSKWTSRLKCNLYYYRTNYFI
Sbjct: 1   MDWSAVTAEDLVDALREVDWSTPPRPVPEFFSRFTVPRSYSKWTSRLKCNLYYYRTNYFI 60

Query: 61  LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
           LIMFILG+GF+ KPV+ILAAF TG+SIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP
Sbjct: 61  LIMFILGIGFIWKPVAILAAFMTGISIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120

Query: 121 LRPVIRGRPSSKRSIHICGRPRWXXXXXXXXXXXXXWMTSCSLLTVLWALIVGLLATLLH 180
           + PV+RGRPSSKRSIHICGRPRW             W+TSCSLLTVLWAL++ + ATLLH
Sbjct: 121 ITPVLRGRPSSKRSIHICGRPRWLFVLLFSAVSCMLWLTSCSLLTVLWALLIAIFATLLH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEF 209
           ASFRTPNLKARLNTFREEFRAVWRNYSE 
Sbjct: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,148,270
Number of extensions: 260625
Number of successful extensions: 970
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 154 (63.9 bits)