BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0847900 Os01g0847900|AK059798
(209 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11397.1 | chr3:3576173-3577765 FORWARD LENGTH=210 292 9e-80
AT5G05987.1 | chr5:1804881-1806559 FORWARD LENGTH=210 290 3e-79
AT5G02040.1 | chr5:401163-402471 FORWARD LENGTH=210 280 4e-76
AT1G04260.1 | chr1:1140749-1141297 REVERSE LENGTH=183 49 2e-06
>AT3G11397.1 | chr3:3576173-3577765 FORWARD LENGTH=210
Length = 209
Score = 292 bits (747), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 137/208 (65%), Positives = 163/208 (78%)
Query: 1 MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI 60
MDW SV AED+++ALREV+WS PR ++EFFSRF PRS+SKW SRLKCNLYYYRTNYFI
Sbjct: 1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFI 60
Query: 61 LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
L +F+LG+ + +P++IL A T LS+AFLNDSFA TFNEK+ RT+R FSPHLAAKMRPP
Sbjct: 61 LFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPP 120
Query: 121 LRPVIRGRPSSKRSIHICGRPRWXXXXXXXXXXXXXWMTSCSLLTVLWALIVGLLATLLH 180
PVIRGR +++++++ICG+PR W TSC LL VL+AL LL LLH
Sbjct: 121 HMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLH 180
Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSE 208
AS RTPNLKARLNTFREEFRAVWRNYSE
Sbjct: 181 ASLRTPNLKARLNTFREEFRAVWRNYSE 208
>AT5G05987.1 | chr5:1804881-1806559 FORWARD LENGTH=210
Length = 209
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 131/208 (62%), Positives = 164/208 (78%)
Query: 1 MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI 60
MDW +V AED+++ALREV+WSTPPR EFFSRF PRS+SKW SRLKCNLYYYRTNYFI
Sbjct: 1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFI 60
Query: 61 LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
L++F+LG+ + +P++++ A T LSIAFLNDSFA +FNEK RT+R FSPH+AAKMRPP
Sbjct: 61 LVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPP 120
Query: 121 LRPVIRGRPSSKRSIHICGRPRWXXXXXXXXXXXXXWMTSCSLLTVLWALIVGLLATLLH 180
PVIRGR ++++++++CG+PRW W +SC LL VL+AL+ L ++H
Sbjct: 121 HMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVH 180
Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSE 208
AS RTPNLKARLNTFREEFRAVWRNYSE
Sbjct: 181 ASIRTPNLKARLNTFREEFRAVWRNYSE 208
>AT5G02040.1 | chr5:401163-402471 FORWARD LENGTH=210
Length = 209
Score = 280 bits (716), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/208 (69%), Positives = 164/208 (78%)
Query: 1 MDWSSVTAEDLVDALREVDWSTPPRPVSEFFSRFTAPRSYSKWTSRLKCNLYYYRTNYFI 60
MDW +VT +DL DALREVDWS+PPRP SEFFSRFT P+S KW SRLKCNLYYYRTNYFI
Sbjct: 1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFI 60
Query: 61 LIMFILGMGFLRKPVSILAAFSTGLSIAFLNDSFAVTFNEKVTRTVRQFSPHLAAKMRPP 120
+I+ ILG+G L +P++I AA T LS+AFLNDSFA +F+EK TRTVR+FSP LAAKMRPP
Sbjct: 61 MIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPP 120
Query: 121 LRPVIRGRPSSKRSIHICGRPRWXXXXXXXXXXXXXWMTSCSLLTVLWALIVGLLATLLH 180
L PV RGRPSSKR+IH+CG+PRW W S LL V AL++ LAT+LH
Sbjct: 121 LTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILH 180
Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSE 208
AS RTPNLKAR NTFREEFRAVWRNYSE
Sbjct: 181 ASLRTPNLKARFNTFREEFRAVWRNYSE 208
>AT1G04260.1 | chr1:1140749-1141297 REVERSE LENGTH=183
Length = 182
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 8 AEDLVDALREVDWST--PPRPVSEFF--SRFTAPRSYSKWTSRLKCNLYYYRTNYFILIM 63
A ++ ++E S RP +F S F+ P S + T+R+ NL ++R NY I++
Sbjct: 2 ANQVITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILS 61
Query: 64 FILGMGFLRKPVSILAAFSTGLSIAFL 90
+LG+ + +P++ILA + GL+ FL
Sbjct: 62 ILLGLTLITRPIAILAFIAVGLAWFFL 88
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,444,578
Number of extensions: 163558
Number of successful extensions: 503
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 4
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)