BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0452900 Os05g0452900|AK104063
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0452900 Conserved hypothetical protein 649 0.0
Os01g0850100 Conserved hypothetical protein 550 e-157
Os05g0287800 Conserved hypothetical protein 452 e-127
>Os05g0452900 Conserved hypothetical protein
Length = 325
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/325 (96%), Positives = 315/325 (96%)
Query: 1 MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL 60
MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL
Sbjct: 1 MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL 60
Query: 61 LQDLGFMALPEFGQDKGYLSEXXXXXXXXXXVLWTFHPFIYHSKRFYTVLIWRRVLAFLV 120
LQDLGFMALPEFGQDKGYLSE VLWTFHPFIYHSKRFYTVLIWRRVLAFLV
Sbjct: 61 LQDLGFMALPEFGQDKGYLSESIFASIFASFVLWTFHPFIYHSKRFYTVLIWRRVLAFLV 120
Query: 121 ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS 180
ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS
Sbjct: 121 ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS 180
Query: 181 HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF 240
HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF
Sbjct: 181 HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF 240
Query: 241 VDNKLPEMPDRTNGVPLLPLSTREKDGRLKEEKDSRLKEEFHKLLNGNHGDPTDRRQRAQ 300
VDNKLPEMPDRTNGVPLLPLSTREKDGRLKEEKDSRLKEEFHKLLNGNHGDPTDRRQRAQ
Sbjct: 241 VDNKLPEMPDRTNGVPLLPLSTREKDGRLKEEKDSRLKEEFHKLLNGNHGDPTDRRQRAQ 300
Query: 301 MNGRHDEDINHAHSTLSDAAVNGGT 325
MNGRHDEDINHAHSTLSDAAVNGGT
Sbjct: 301 MNGRHDEDINHAHSTLSDAAVNGGT 325
>Os01g0850100 Conserved hypothetical protein
Length = 326
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 264/328 (80%), Positives = 286/328 (87%), Gaps = 8/328 (2%)
Query: 1 MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL 60
M +YIAREA+K+WRKV E +VEL LL EKW LLLAG+VFQYIHGLAARGVHYLHRPGPL
Sbjct: 1 MAVYIAREATKLWRKVCAEIAVELQLLFEKWRLLLAGLVFQYIHGLAARGVHYLHRPGPL 60
Query: 61 LQDLGFMALPEFGQDKGYLSEXXXXXXXXXXVLWTFHPFIYHSKRFYTVLIWRRVLAFLV 120
LQDLGFMALPE GQDKGY+SE +LW+FHPFIYHSKRFYTVL+WRRVLAFLV
Sbjct: 61 LQDLGFMALPELGQDKGYVSESVFTFIFISFLLWSFHPFIYHSKRFYTVLLWRRVLAFLV 120
Query: 121 ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS 180
ASQ LRIITFYSTQLPGPNYHCREGSK+ATLPPP+NV EVLLINFPRGVLFGCGDLIFSS
Sbjct: 121 ASQFLRIITFYSTQLPGPNYHCREGSKMATLPPPHNVLEVLLINFPRGVLFGCGDLIFSS 180
Query: 181 HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF 240
HMIFTLVFVRTYHKYGSKR +K+LAW MAI+QSLLIIASRKHYSVDVVVAWYTVNLVVFF
Sbjct: 181 HMIFTLVFVRTYHKYGSKRLIKILAWLMAIIQSLLIIASRKHYSVDVVVAWYTVNLVVFF 240
Query: 241 VDNKLPEMPDRTNGVPLLPLSTREKDGRLKE-----EKDSRLKEEFHKLLNGNHGDPTDR 295
+DNKLPEMPDRTNG LLP++ ++KDGR KE EKD ++KEEFHKLLNGN D TDR
Sbjct: 241 IDNKLPEMPDRTNGSSLLPVTAKDKDGRTKEELHKLEKDCKMKEEFHKLLNGNTVDSTDR 300
Query: 296 RQRAQMNGRHDEDINHAHSTLSDAAVNG 323
RQR QMNG+H EDINH TLSDA NG
Sbjct: 301 RQRVQMNGKHGEDINH---TLSDATPNG 325
>Os05g0287800 Conserved hypothetical protein
Length = 313
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/310 (70%), Positives = 251/310 (80%), Gaps = 9/310 (2%)
Query: 3 IYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPLLQ 62
+Y+AR ASKV R++T+ETSVEL +L EKW LLLAG+VFQYIHGLAARGVHYLHRPGP LQ
Sbjct: 4 LYLARGASKVVRRITSETSVELKILTEKWQLLLAGLVFQYIHGLAARGVHYLHRPGPTLQ 63
Query: 63 DLGFMALPEFGQDKGYLSEXXXXXXXXXXVLWTFHPFIYHSKRFYTVLIWRRVLAFLVAS 122
DLGFM LPE G+++GY+SE VLWTFHPFI +KRFYTVLIWRRVLAFL AS
Sbjct: 64 DLGFMILPELGKERGYISETLFTFIFLSFVLWTFHPFILQTKRFYTVLIWRRVLAFLCAS 123
Query: 123 QVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSSHM 182
Q LRI+TFYSTQLPGPNYHCREGS LA LP P NV EVLLINFPRGV++GCGDLIFSSHM
Sbjct: 124 QFLRIVTFYSTQLPGPNYHCREGSALARLPHPQNVAEVLLINFPRGVIYGCGDLIFSSHM 183
Query: 183 IFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFFVD 242
IFT+VFV TY KYG+ RF+K+LAW +AI QSLLIIASRKHYSVDVVVAWYTVNLVVFFVD
Sbjct: 184 IFTIVFVVTYQKYGNIRFIKMLAWCIAIAQSLLIIASRKHYSVDVVVAWYTVNLVVFFVD 243
Query: 243 NKLPEMPDRTNG-VPLLPLSTREKDGRLKEEKDSRLKEEFHKLLNGNHGDPTDRRQRAQM 301
KL E+PDR+ G +LP+S +EKD +LKE+K ++LNGN D D R QM
Sbjct: 244 KKLTELPDRSAGSTSVLPVSIKEKDSKLKEDKT--------RMLNGNSVDSADWRPWTQM 295
Query: 302 NGRHDEDINH 311
NG+H E+ NH
Sbjct: 296 NGKHIENGNH 305
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,412,336
Number of extensions: 472382
Number of successful extensions: 1488
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1482
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)