Os05g0452900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0452900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.35 | 0.298 | 9.44 | 0.594 | 1.08 | -0.997 | 0.468 | 0.0456 | 0.418 | 7.56 | 0.6294 | 143 | -- | -- |
| 40.12 | 0.295 | 9.44 | 0.595 | 1.05 | -0.96 | 0.427 | -- | 0.417 | 7.53 | 1.008 | 163 | -- | -- |
| 40.61 | 0.297 | 9.44 | 0.605 | 1.06 | -0.982 | -- | 0.208 | 0.419 | 7.63 | 0.09203 | 163 | -- | -- |
| 40.71 | 0.297 | 9.44 | 0.609 | 1.05 | -0.968 | -- | -- | 0.416 | 7.6 | 0.3699 | 169 | -- | -- |
| 58.94 | 0.358 | 9.44 | 0.701 | -- | -1.39 | -- | 0.495 | 0.528 | -- | -8.162 | 684 | -- | -- |
| 52.75 | 0.34 | 9.46 | 0.592 | 1.19 | -- | 0.225 | -- | 0.368 | 5.61 | -- | -- | -- | -- |
| 52.87 | 0.341 | 9.46 | 0.592 | 1.19 | -- | -- | -- | 0.367 | 5.59 | -- | -- | -- | -- |
| 59.37 | 0.359 | 9.45 | 0.695 | -- | -1.37 | -- | -- | 0.521 | -- | -9.324 | 684 | -- | -- |
| 50.49 | 0.331 | 9.46 | -- | 1.06 | -0.934 | -- | -- | 0.35 | 7.43 | 1.141 | 163 | -- | -- |
| 126.76 | 0.526 | 9.47 | 0.631 | -- | -- | -- | -- | 0.395 | -- | -- | -- | -- | -- |
| 62.12 | 0.369 | 9.47 | -- | 1.2 | -- | -- | -- | 0.301 | 5.57 | -- | -- | -- | -- |
| 72.07 | 0.395 | 9.46 | -- | -- | -1.35 | -- | -- | 0.442 | -- | -12.95 | 684 | -- | -- |
| 137.27 | 0.547 | 9.49 | -- | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.82 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 10 | 38.26 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 15 | 38.34 | radiation | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 24 | 38.53 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 17 |
| 33 | 38.65 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 20 |
| 37 | 38.70 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 42 | 38.76 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 14 |
| 44 | 38.77 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 79 | 39.03 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 12 |
| 95 | 39.13 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 109 | 39.27 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 18 |
| 115 | 39.36 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 117 | 39.39 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 130 | 39.51 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 10 |
| 145 | 39.63 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 20 |
| 164 | 39.80 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 186 | 39.95 | radiation | 10 | 270 | < th | dose independent | sin | 3 | NA |
| 189 | 39.96 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 22 |
| 194 | 40.01 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 9 |
| 207 | 40.01 | radiation | 20 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 210 | 40.03 | humidity | 60 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 219 | 40.07 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 22 |
| 237 | 40.16 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 247 | 40.21 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 249 | 40.23 | humidity | 60 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 304 | 40.34 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 22 |
| 395 | 40.73 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 10 |
| 412 | 40.80 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 530 | 41.06 | radiation | 10 | 270 | < th | dose independent | rect. | 12 | 22 |
| 613 | 41.27 | humidity | 70 | 90 | > th | dose independent | rect. | 4 | 17 |
| 680 | 41.39 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 774 | 41.47 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 777 | 41.48 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 877 | 41.69 | humidity | 60 | 90 | > th | dose dependent | sin | 2 | NA |
| 908 | 41.77 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 18 |
| 934 | 41.82 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 965 | 41.87 | radiation | 20 | 270 | < th | dose dependent | rect. | 16 | 23 |