BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0452900 Os05g0452900|AK104063
(325 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54020.1 | chr3:20006098-20008020 FORWARD LENGTH=306 442 e-124
AT2G37940.1 | chr2:15877169-15879411 FORWARD LENGTH=306 416 e-117
AT2G29525.1 | chr2:12638533-12640661 FORWARD LENGTH=290 400 e-112
>AT3G54020.1 | chr3:20006098-20008020 FORWARD LENGTH=306
Length = 305
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/323 (67%), Positives = 250/323 (77%), Gaps = 19/323 (5%)
Query: 1 MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL 60
MT+YI REASK+WR+ +E + E+ LL E W LLAG++ QYIHGLAARGVHY+HRPGP
Sbjct: 1 MTLYIRREASKLWRRFCSEITTEIGLLAENWKYLLAGLLCQYIHGLAARGVHYIHRPGPT 60
Query: 61 LQDLGFMALPEFGQDKGYLSEXXXXXXXXXXVLWTFHPFIYHSKRFYTVLIWRRVLAFLV 120
LQD GF LPE GQDKG++SE LWTFHPFI SK+ YTVLIW RVLAFLV
Sbjct: 61 LQDSGFFVLPELGQDKGFISETVFTCVFLSFFLWTFHPFIVKSKKIYTVLIWCRVLAFLV 120
Query: 121 ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS 180
A Q LR+ITFYSTQLPGPNYHCREGS+LA LP P+NV EVLL+NFPRGV++GCGDLIFSS
Sbjct: 121 ACQFLRVITFYSTQLPGPNYHCREGSELARLPRPHNVLEVLLLNFPRGVIYGCGDLIFSS 180
Query: 181 HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF 240
HMIFTLVFVRTY KYGSKRF+KLL W +AI+QSLLIIASRKHY+VDVVVAWYTVNLVVFF
Sbjct: 181 HMIFTLVFVRTYQKYGSKRFIKLLGWVIAILQSLLIIASRKHYTVDVVVAWYTVNLVVFF 240
Query: 241 VDNKLPEMPDRTNGVPLLPLSTREKDGRLKEEKDSRLKEEFHKLLNGNHGDPTDRRQRAQ 300
+D KLPE+PDRT LLP+ +++ R KEE HKLLNGN DP DRR RAQ
Sbjct: 241 LDKKLPELPDRTTA--LLPVISKD-----------RTKEESHKLLNGNGVDPADRRPRAQ 287
Query: 301 MNGRHDEDINHAHSTLSDAAVNG 323
+NG+ D N H +D A NG
Sbjct: 288 VNGK---DSNGGH---TDNATNG 304
>AT2G37940.1 | chr2:15877169-15879411 FORWARD LENGTH=306
Length = 305
Score = 416 bits (1070), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/319 (64%), Positives = 241/319 (75%), Gaps = 14/319 (4%)
Query: 1 MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL 60
MT+YI RE+SK+W++ +E S E+ LL E W LLAG++ QYIHGLAA+GVHY+HRPGP
Sbjct: 1 MTLYIRRESSKLWKRFCSEISTEIGLLAENWKYLLAGLICQYIHGLAAKGVHYIHRPGPT 60
Query: 61 LQDLGFMALPEFGQDKGYLSEXXXXXXXXXXVLWTFHPFIYHSKRFYTVLIWRRVLAFLV 120
LQDLGF LPE GQ++ Y+SE LWTFHPFI +K+ YTVLIW RVLAFLV
Sbjct: 61 LQDLGFFLLPELGQERSYISETVFTSVFLSFFLWTFHPFILKTKKIYTVLIWCRVLAFLV 120
Query: 121 ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS 180
A Q LR+ITFYSTQLPGPNYHCREGSK++ LP P + EVL IN P GV++GCGDLIFSS
Sbjct: 121 ACQFLRVITFYSTQLPGPNYHCREGSKVSRLPWPKSALEVLEIN-PHGVMYGCGDLIFSS 179
Query: 181 HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF 240
HMIFTLVFVRTY KYG+KRF+KL W AIVQSLLIIASRKHYSVDVVVAWYTVNLVVF
Sbjct: 180 HMIFTLVFVRTYQKYGTKRFIKLFGWLTAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFC 239
Query: 241 VDNKLPEMPDRTNGVPLLPLSTREKDGRLKEEKDSRLKEEFHKLLNGNHGDPTDRRQRAQ 300
+D KLPE+PDRT LLP+ +++ R KEE HKLLNGN DP D R RAQ
Sbjct: 240 LDKKLPELPDRT--AVLLPVISKD-----------RTKEENHKLLNGNGVDPADWRPRAQ 286
Query: 301 MNGRHDEDINHAHSTLSDA 319
+NG+ D + H +T++ A
Sbjct: 287 VNGKIDSNGVHTDNTMNGA 305
>AT2G29525.1 | chr2:12638533-12640661 FORWARD LENGTH=290
Length = 289
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 185/283 (65%), Positives = 225/283 (79%), Gaps = 3/283 (1%)
Query: 1 MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL 60
M +Y+ REA K+WR++ +E ++E SLL EKW L+LAG+VFQYIHGLAA GVHYLHRPGP
Sbjct: 1 MPVYVDREAPKLWRRIYSEATLEASLLAEKWKLVLAGLVFQYIHGLAAHGVHYLHRPGPT 60
Query: 61 LQDLGFMALPEFGQDKGYLSEXXXXXXXXXXVLWTFHPFIYHSKRFYTVLIWRRVLAFLV 120
LQD GF LP GQDK + SE +LWTFHPF+ HSK+ TVLIW RV +L
Sbjct: 61 LQDAGFFILPALGQDKAFFSETVFVTIFGSFILWTFHPFVSHSKKICTVLIWCRVFVYLA 120
Query: 121 ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS 180
ASQ LRIITF++TQLPGPNYHCREGSKLA +PPP NV EVLLINFP GV++GCGDLIFSS
Sbjct: 121 ASQSLRIITFFATQLPGPNYHCREGSKLAKIPPPKNVLEVLLINFPDGVIYGCGDLIFSS 180
Query: 181 HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF 240
H IFTLVFVRTY +YG++R++K LAW MA++QS+LIIASRKHY+VD+VVAWYTVNLV+F+
Sbjct: 181 HTIFTLVFVRTYQRYGTRRWIKHLAWLMAVIQSILIIASRKHYTVDIVVAWYTVNLVMFY 240
Query: 241 VDNKLPEMPDRTNG---VPLLPLSTREKDGRLKEEKDSRLKEE 280
VD+KLPEM +R++G PLLPLST++ + KE+ L E
Sbjct: 241 VDSKLPEMAERSSGPSPTPLLPLSTKDSKNKSKEDHQRLLNEN 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,241,761
Number of extensions: 307699
Number of successful extensions: 962
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)