Os05g0287800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0287800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.03 | 0.491 | 9.29 | 0.26 | 1.26 | -1.04 | 0.457 | 0.554 | 0.37 | 22.6 | 25.73 | 1321 | -- | -- |
| 109.44 | 0.487 | 9.3 | 0.149 | 1.26 | -0.983 | 0.552 | -- | 0.34 | 22.5 | 25.7 | 1340 | -- | -- |
| 109.88 | 0.488 | 9.29 | 0.284 | 1.26 | -1.04 | -- | 0.71 | 0.381 | 22.6 | 25.72 | 1319 | -- | -- |
| 110.28 | 0.489 | 9.31 | 0.0832 | 1.26 | -0.99 | -- | -- | 0.31 | 22.6 | 25.72 | 1320 | -- | -- |
| 183.05 | 0.634 | 9.32 | -0.158 | -- | -0.603 | -- | -0.334 | 0.152 | -- | 25.74 | 1505 | -- | -- |
| 136.36 | 0.547 | 9.38 | -0.213 | 1.19 | -- | 0.421 | -- | -0.0017 | 22.2 | -- | -- | -- | -- |
| 137.07 | 0.548 | 9.38 | -0.229 | 1.19 | -- | -- | -- | -0.00263 | 22.2 | -- | -- | -- | -- |
| 183.51 | 0.634 | 9.31 | -0.0816 | -- | -0.611 | -- | -- | 0.173 | -- | 25.72 | 1320 | -- | -- |
| 110.44 | 0.489 | 9.31 | -- | 1.26 | -0.965 | -- | -- | 0.3 | 22.6 | 25.73 | 1320 | -- | -- |
| 222.37 | 0.697 | 9.35 | -0.212 | -- | -- | -- | -- | -3.88e-05 | -- | -- | -- | -- | -- |
| 138.46 | 0.55 | 9.38 | -- | 1.18 | -- | -- | -- | 0.0229 | 22.2 | -- | -- | -- | -- |
| 183.68 | 0.633 | 9.31 | -- | -- | -0.615 | -- | -- | 0.184 | -- | 25.72 | 1320 | -- | -- |
| 223.55 | 0.698 | 9.34 | -- | -- | -- | -- | -- | 0.0235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 2 | 108.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 7 | 109.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 8 | 109.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 10 | 109.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 12 | 109.94 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 13 | 109.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 14 | 109.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 31 | 110.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 64 | 110.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 71 | 110.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 72 | 110.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 80 | 110.77 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 81 | 110.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 87 | 111.00 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 88 | 111.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 98 | 111.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 100 | 111.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 116 | 111.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 117 | 111.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 121 | 111.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 169 | 111.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 175 | 111.56 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 22 |
| 194 | 111.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 203 | 111.71 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 23 |
| 216 | 111.76 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 226 | 111.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 231 | 111.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 239 | 111.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 241 | 111.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 260 | 112.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 272 | 112.27 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 273 | 112.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 275 | 112.28 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 277 | 112.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 279 | 112.31 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 23 |
| 282 | 112.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 11 |
| 285 | 112.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 345 | 112.53 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 349 | 112.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 376 | 112.64 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 377 | 112.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 387 | 112.66 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 393 | 112.67 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 397 | 112.68 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 402 | 112.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 414 | 112.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 426 | 112.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 440 | 112.80 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 445 | 112.81 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 446 | 112.82 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 487 | 112.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 490 | 112.95 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 493 | 112.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 508 | 112.99 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 522 | 113.05 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 529 | 113.06 | temperature | 25 | 4320 | < th | dose independent | sin | 8 | NA |
| 536 | 113.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 561 | 113.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 563 | 113.12 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 586 | 113.16 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 645 | 113.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 22 |
| 650 | 113.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 655 | 113.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 700 | 113.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 704 | 113.35 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 719 | 113.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 731 | 113.38 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 732 | 113.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 769 | 113.43 | temperature | 25 | 90 | > th | dose independent | no | NA | NA |
| 771 | 113.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 783 | 113.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 798 | 113.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 861 | 113.54 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 5 |
| 930 | 113.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 952 | 113.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 959 | 113.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 965 | 113.64 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |