BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0287800 Os05g0287800|AK071727
(313 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54020.1 | chr3:20006098-20008020 FORWARD LENGTH=306 427 e-120
AT2G37940.1 | chr2:15877169-15879411 FORWARD LENGTH=306 412 e-115
AT2G29525.1 | chr2:12638533-12640661 FORWARD LENGTH=290 377 e-105
>AT3G54020.1 | chr3:20006098-20008020 FORWARD LENGTH=306
Length = 305
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/310 (67%), Positives = 244/310 (78%), Gaps = 7/310 (2%)
Query: 4 LYLARGASKVVRRITSETSVELKILTEKWQLLLAGLVFQYIHGLAARGVHYLHRPGPTLQ 63
LY+ R ASK+ RR SE + E+ +L E W+ LLAGL+ QYIHGLAARGVHY+HRPGPTLQ
Sbjct: 3 LYIRREASKLWRRFCSEITTEIGLLAENWKYLLAGLLCQYIHGLAARGVHYIHRPGPTLQ 62
Query: 64 DLGFMILPELGKERGYISETLFTFIFLSFVLWTFHPFILQTKRFYTVLIWRRVLAFLCAS 123
D GF +LPELG+++G+ISET+FT +FLSF LWTFHPFI+++K+ YTVLIW RVLAFL A
Sbjct: 63 DSGFFVLPELGQDKGFISETVFTCVFLSFFLWTFHPFIVKSKKIYTVLIWCRVLAFLVAC 122
Query: 124 QFLRIVTFYSTQLPGPNYHCREGSALARLPHPQNVAEVLLINFPRGVIYGCGDLIFSSHM 183
QFLR++TFYSTQLPGPNYHCREGS LARLP P NV EVLL+NFPRGVIYGCGDLIFSSHM
Sbjct: 123 QFLRVITFYSTQLPGPNYHCREGSELARLPRPHNVLEVLLLNFPRGVIYGCGDLIFSSHM 182
Query: 184 IFTIVFVVTYQKYGNIRFIKMLAWCXXXXXXXXXXXXRKHYSVDVVVAWYTVNLVVFFVD 243
IFT+VFV TYQKYG+ RFIK+L W RKHY+VDVVVAWYTVNLVVFF+D
Sbjct: 183 IFTLVFVRTYQKYGSKRFIKLLGWVIAILQSLLIIASRKHYTVDVVVAWYTVNLVVFFLD 242
Query: 244 KKLTELPDRSAGSTSVLPVSIKEKDSKLKEDKTRMLNGNSVDSADWRPWTQMNGKHIENG 303
KKL ELPDR +T++LPV K++ KE+ ++LNGN VD AD RP Q+NGK NG
Sbjct: 243 KKLPELPDR---TTALLPVISKDRT---KEESHKLLNGNGVDPADRRPRAQVNGKD-SNG 295
Query: 304 NHLDTETTKT 313
H D T T
Sbjct: 296 GHTDNATNGT 305
>AT2G37940.1 | chr2:15877169-15879411 FORWARD LENGTH=306
Length = 305
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/305 (66%), Positives = 236/305 (77%), Gaps = 7/305 (2%)
Query: 4 LYLARGASKVVRRITSETSVELKILTEKWQLLLAGLVFQYIHGLAARGVHYLHRPGPTLQ 63
LY+ R +SK+ +R SE S E+ +L E W+ LLAGL+ QYIHGLAA+GVHY+HRPGPTLQ
Sbjct: 3 LYIRRESSKLWKRFCSEISTEIGLLAENWKYLLAGLICQYIHGLAAKGVHYIHRPGPTLQ 62
Query: 64 DLGFMILPELGKERGYISETLFTFIFLSFVLWTFHPFILQTKRFYTVLIWRRVLAFLCAS 123
DLGF +LPELG+ER YISET+FT +FLSF LWTFHPFIL+TK+ YTVLIW RVLAFL A
Sbjct: 63 DLGFFLLPELGQERSYISETVFTSVFLSFFLWTFHPFILKTKKIYTVLIWCRVLAFLVAC 122
Query: 124 QFLRIVTFYSTQLPGPNYHCREGSALARLPHPQNVAEVLLINFPRGVIYGCGDLIFSSHM 183
QFLR++TFYSTQLPGPNYHCREGS ++RLP P++ EVL IN P GV+YGCGDLIFSSHM
Sbjct: 123 QFLRVITFYSTQLPGPNYHCREGSKVSRLPWPKSALEVLEIN-PHGVMYGCGDLIFSSHM 181
Query: 184 IFTIVFVVTYQKYGNIRFIKMLAWCXXXXXXXXXXXXRKHYSVDVVVAWYTVNLVVFFVD 243
IFT+VFV TYQKYG RFIK+ W RKHYSVDVVVAWYTVNLVVF +D
Sbjct: 182 IFTLVFVRTYQKYGTKRFIKLFGWLTAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFCLD 241
Query: 244 KKLTELPDRSAGSTSVLPVSIKEKDSKLKEDKTRMLNGNSVDSADWRPWTQMNGKHIENG 303
KKL ELPDR+A +LPV K++ KE+ ++LNGN VD ADWRP Q+NGK NG
Sbjct: 242 KKLPELPDRTA---VLLPVISKDRT---KEENHKLLNGNGVDPADWRPRAQVNGKIDSNG 295
Query: 304 NHLDT 308
H D
Sbjct: 296 VHTDN 300
>AT2G29525.1 | chr2:12638533-12640661 FORWARD LENGTH=290
Length = 289
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/283 (63%), Positives = 220/283 (77%), Gaps = 2/283 (0%)
Query: 4 LYLARGASKVVRRITSETSVELKILTEKWQLLLAGLVFQYIHGLAARGVHYLHRPGPTLQ 63
+Y+ R A K+ RRI SE ++E +L EKW+L+LAGLVFQYIHGLAA GVHYLHRPGPTLQ
Sbjct: 3 VYVDREAPKLWRRIYSEATLEASLLAEKWKLVLAGLVFQYIHGLAAHGVHYLHRPGPTLQ 62
Query: 64 DLGFMILPELGKERGYISETLFTFIFLSFVLWTFHPFILQTKRFYTVLIWRRVLAFLCAS 123
D GF ILP LG+++ + SET+F IF SF+LWTFHPF+ +K+ TVLIW RV +L AS
Sbjct: 63 DAGFFILPALGQDKAFFSETVFVTIFGSFILWTFHPFVSHSKKICTVLIWCRVFVYLAAS 122
Query: 124 QFLRIVTFYSTQLPGPNYHCREGSALARLPHPQNVAEVLLINFPRGVIYGCGDLIFSSHM 183
Q LRI+TF++TQLPGPNYHCREGS LA++P P+NV EVLLINFP GVIYGCGDLIFSSH
Sbjct: 123 QSLRIITFFATQLPGPNYHCREGSKLAKIPPPKNVLEVLLINFPDGVIYGCGDLIFSSHT 182
Query: 184 IFTIVFVVTYQKYGNIRFIKMLAWCXXXXXXXXXXXXRKHYSVDVVVAWYTVNLVVFFVD 243
IFT+VFV TYQ+YG R+IK LAW RKHY+VD+VVAWYTVNLV+F+VD
Sbjct: 183 IFTLVFVRTYQRYGTRRWIKHLAWLMAVIQSILIIASRKHYTVDIVVAWYTVNLVMFYVD 242
Query: 244 KKLTELPDRSAG--STSVLPVSIKEKDSKLKEDKTRMLNGNSV 284
KL E+ +RS+G T +LP+S K+ +K KED R+LN N+V
Sbjct: 243 SKLPEMAERSSGPSPTPLLPLSTKDSKNKSKEDHQRLLNENNV 285
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,452,750
Number of extensions: 259343
Number of successful extensions: 748
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)