BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0451300 Os05g0451300|AK108341
         (166 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0451300  Conserved hypothetical protein                      228   2e-60
Os03g0265900  Conserved hypothetical protein                      110   4e-25

>Os05g0451300 Conserved hypothetical protein
          Length = 166

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/166 (69%), Positives = 116/166 (69%)

Query: 1   MATTRPARSDPHLPPXXXXXXXXXXXGYFDSMAXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MATTRPARSDPHLPP           GYFDSMA                           
Sbjct: 1   MATTRPARSDPHLPPEEAARVEAEVRGYFDSMAPRRPSKPPRSDPSDAGEGGAEADADAD 60

Query: 61  XXXXXXXXXXXXKPQKLVLDGGDVNGEEYVETQYYNGLNCIDKQHHTTGTGFIKVERPNG 120
                       KPQKLVLDGGDVNGEEYVETQYYNGLNCIDKQHHTTGTGFIKVERPNG
Sbjct: 61  LPELRRLRDLEAKPQKLVLDGGDVNGEEYVETQYYNGLNCIDKQHHTTGTGFIKVERPNG 120

Query: 121 SSFNVTTVAYSSDSIIRCMSNPATNDWIPSSETVIPVSNKPSRSDS 166
           SSFNVTTVAYSSDSIIRCMSNPATNDWIPSSETVIPVSNKPSRSDS
Sbjct: 121 SSFNVTTVAYSSDSIIRCMSNPATNDWIPSSETVIPVSNKPSRSDS 166



>Os03g0265900 Conserved hypothetical protein
          Length = 162

 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 4/164 (2%)

Query: 4   TRPARSDPHLPPXXXXXXXXXXXGYFDSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 63
           +RPARSD HL P            Y+D  A                              
Sbjct: 2   SRPARSDAHLSPEGEAAMEAEVREYYDEAAPKRHSKPSRSEPSAVYTDALVPDDSHPELD 61

Query: 64  XXXXXXXXXKPQKLVLDGGDVNGEEYVETQYYNGLNCIDKQHHTTGTGFIKVERPNG-SS 122
                      +KLV +GG   G+E+VET+YY  L C+ KQHHTTGTGFIK+++P+  +S
Sbjct: 62  RFQQLEAHT--EKLVCEGGKA-GDEFVETEYYKDLGCVGKQHHTTGTGFIKMDKPSADAS 118

Query: 123 FNVTTVAYSSDSIIRCMSNPATNDWIPSSETVIPVSNKPSRSDS 166
           F+++    +S+    C  NPATN+WIPS++TV P S+KP+RSDS
Sbjct: 119 FHLSDDPDASERHASCKGNPATNEWIPSADTVYPASDKPNRSDS 162



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,521,323
Number of extensions: 153895
Number of successful extensions: 237
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 152 (63.2 bits)