FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0451300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.96 (0.0559) R2 : 0.656
β1 : -0.769 (0.205) R2dD : 0.0121 R2D : 0.01
β2 : 0.642 (0.152) R2dC : 0.0118 R2C : 0.0602
β3 : 4.22 (0.166) R2dE : 0.53 R2E : 0.579
β4 : -4.7 (0.668) R2dD*C : 0.0333 R2D*C : 0.0291
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.494 (0.119) R2dN8 : 0.0123 R2N8 : 0.0277
σ : 1.04
deviance : 501.37
__
_____
C
peak time of C : 6.21
E
wheather : humidity
threshold : 60.26
memory length : 722
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 2.66

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
490.93 1.04 7.92 -0.956 0.762 3.9 -5.72 3.23 0.444 4.98 60.07 732 18.1 2.93
501.37 1.04 7.96 -0.769 0.642 4.22 -4.7 -- 0.494 6.21 60.26 722 18.4 2.66
550.48 1.09 7.91 -0.853 1.07 3.65 -- 1.05 0.512 4.41 60.72 740 17.9 2.9
539.56 1.08 7.94 -0.991 1.09 3.67 -- -- 0.371 3.2 67.35 729 19.4 1.17
555.92 1.1 7.94 -0.82 -- 4.41 -- 0.503 0.446 -- 58.67 764 17.9 3.95
758.76 1.29 7.91 -0.724 3.29 -- -0.358 -- 0.613 2.3 -- -- -- --
759.19 1.29 7.91 -0.714 3.29 -- -- -- 0.615 2.27 -- -- -- --
551.92 1.09 7.93 -0.872 -- 4.32 -- -- 0.452 -- 61.82 726 19.5 0.97
559.08 1.1 7.91 -- 1.3 3.41 -- -- 0.553 3 67.97 731 19.3 1.18
1402.24 1.75 7.88 -0.575 -- -- -- -- 0.695 -- -- -- -- --
772.63 1.3 7.89 -- 3.28 -- -- -- 0.695 2.27 -- -- -- --
571.63 1.11 7.92 -- -- 4.26 -- -- 0.54 -- 61.37 724 19.6 0.9
1410.97 1.75 7.87 -- -- -- -- -- 0.759 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 493.39 humidity 60 720 > th dose dependent rect. 18 3
4 507.08 humidity 70 720 > th dose independent rect. 18 9
5 508.79 humidity 70 720 > th dose independent rect. 18 3
13 516.76 humidity 70 720 > th dose independent rect. 17 14
30 525.78 humidity 70 720 > th dose independent sin 12 NA
72 542.76 temperature 30 720 < th dose independent rect. 18 9
97 549.60 humidity 80 720 < th dose dependent rect. 18 3
118 553.29 humidity 70 1440 > th dose independent rect. 17 21
128 555.54 humidity 80 720 < th dose dependent rect. 18 14
133 556.72 humidity 70 1440 < th dose independent rect. 17 21
145 558.77 humidity 70 1440 < th dose independent rect. 9 11
186 560.92 humidity 70 1440 < th dose independent sin 17 NA
196 561.27 humidity 80 1440 < th dose dependent rect. 15 19
198 561.33 humidity 70 1440 > th dose independent rect. 9 15
201 561.37 humidity 70 1440 > th dose independent rect. 9 18
208 561.48 humidity 70 1440 > th dose independent rect. 9 11
228 562.43 temperature 30 720 < th dose independent rect. 17 14
269 563.97 humidity 70 1440 < th dose independent no NA NA
396 565.52 humidity 70 1440 > th dose independent rect. 2 22
408 565.57 humidity 70 1440 > th dose independent no NA NA
412 565.57 humidity 70 1440 > th dose independent rect. 21 23
456 565.87 humidity 80 1440 < th dose dependent sin 12 NA
463 566.04 humidity 70 1440 > th dose independent sin 18 NA
473 566.53 humidity 70 1440 > th dose independent rect. 11 23
480 566.76 temperature 30 720 < th dose independent rect. 18 1
555 570.40 humidity 80 1440 < th dose dependent rect. 23 22
559 570.47 humidity 80 1440 < th dose dependent rect. 7 23
561 570.51 humidity 80 1440 < th dose dependent no NA NA
574 570.74 humidity 80 1440 < th dose dependent rect. 1 23
583 570.80 humidity 70 720 < th dose independent rect. 18 2
595 570.87 humidity 50 720 > th dose dependent rect. 17 14
662 571.81 humidity 80 1440 < th dose dependent rect. 7 14
695 572.14 temperature 30 720 < th dose independent rect. 17 4
702 572.28 humidity 50 720 > th dose dependent sin 14 NA
745 573.01 humidity 80 1440 < th dose dependent rect. 15 6
788 573.89 humidity 50 1440 > th dose dependent rect. 4 17
947 576.34 temperature 30 720 > th dose dependent rect. 18 1