BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0451300 Os05g0451300|AK108341
         (166 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37300.1  | chr4:17554805-17555498 FORWARD LENGTH=174           76   1e-14

>AT4G37300.1 | chr4:17554805-17555498 FORWARD LENGTH=174
          Length = 173

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 7/96 (7%)

Query: 78  VLDGGDVNG--EEYVETQYYNGLNCIDKQHHTTGTGFIK-VERPNGSSFNVTTVAYSSDS 134
           VL  GD +   +E++ET+YY+ L  IDKQHHTTG+GFI  V+  NG      T A   D 
Sbjct: 77  VLGEGDSSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVVKEDNGEESEAVTAAAIGDG 136

Query: 135 IIRCM--SNPATNDWIPSSETVI--PVSNKPSRSDS 166
             + +  SNPATN+WIP++E       S+KP+RS+S
Sbjct: 137 GEKAVYRSNPATNEWIPATEEDFDSESSSKPNRSES 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,854,520
Number of extensions: 100447
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 108 (46.2 bits)