Os03g0265900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0265900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.98 | 0.614 | 12.5 | -1.44 | 6.05 | -2.26 | 2.2 | -0.4 | -0.663 | 16.7 | 14.9 | 71 | 20 | 15.2 |
| 170.65 | 0.608 | 12.5 | -1.4 | 6.11 | -2.21 | 2.4 | -- | -0.643 | 16.7 | 15.07 | 55 | 20.1 | 15.3 |
| 179.27 | 0.624 | 12.5 | -1.48 | 5.98 | -2.29 | -- | -1.86 | -0.686 | 16.7 | 15.23 | 68 | 20 | 15.2 |
| 185.42 | 0.634 | 12.5 | -1.38 | 6.12 | -2.25 | -- | -- | -0.614 | 16.7 | 15.47 | 56 | 20 | 15.3 |
| 599.02 | 1.14 | 12.2 | -1.06 | -- | -5.54 | -- | -3.91 | -0.0561 | -- | -14.34 | 81 | 21.4 | 13.6 |
| 250.23 | 0.742 | 12.6 | -1.63 | 7.41 | -- | 2.58 | -- | -1.02 | 16.8 | -- | -- | -- | -- |
| 267.66 | 0.766 | 12.6 | -1.62 | 7.43 | -- | -- | -- | -1.01 | 16.7 | -- | -- | -- | -- |
| 219.49 | 0.69 | 12.4 | -1.5 | -- | -7.55 | -- | -- | -0.743 | -- | -18.73 | 413 | 18.8 | 13 |
| 234.49 | 0.713 | 12.4 | -- | 6.17 | -2.4 | -- | -- | -0.426 | 16.7 | 16.28 | 69 | 20 | 15.2 |
| 3189.53 | 2.64 | 12.5 | -1.9 | -- | -- | -- | -- | -1.2 | -- | -- | -- | -- | -- |
| 336.72 | 0.858 | 12.5 | -- | 7.46 | -- | -- | -- | -0.828 | 16.7 | -- | -- | -- | -- |
| 261.62 | 0.753 | 12.4 | -- | -- | -7.83 | -- | -- | -0.487 | -- | -4.405 | 412 | 18.8 | 13 |
| 3284.65 | 2.68 | 12.5 | -- | -- | -- | -- | -- | -0.991 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 2 | 176.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 15 |
| 4 | 177.72 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 18 |
| 7 | 178.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 15 | 179.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 41 | 185.62 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 15 |
| 43 | 185.88 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 5 |
| 63 | 189.67 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 66 | 189.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 67 | 190.01 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 3 |
| 71 | 190.24 | temperature | 10 | 10 | > th | dose dependent | sin | 6 | NA |
| 72 | 190.37 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 7 |
| 105 | 192.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 167 | 196.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 268 | 200.90 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 15 |
| 270 | 200.96 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 5 |
| 272 | 200.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 10 |
| 298 | 201.59 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 4 |
| 315 | 201.82 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 20 | 15 |
| 331 | 202.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 381 | 203.69 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 432 | 205.09 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 10 |
| 442 | 205.31 | temperature | 15 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 444 | 205.33 | temperature | 15 | 270 | > th | dose independent | rect. | 13 | 10 |
| 447 | 205.43 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 466 | 205.69 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 518 | 206.48 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 551 | 206.86 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 595 | 207.36 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 15 |
| 598 | 207.38 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 609 | 207.53 | temperature | 20 | 270 | < th | dose dependent | sin | 9 | NA |
| 619 | 207.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 620 | 207.68 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 624 | 207.71 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 645 | 207.94 | wind | 3 | 270 | < th | dose dependent | rect. | 5 | 3 |
| 661 | 208.12 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 670 | 208.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 677 | 208.29 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 15 |
| 678 | 208.29 | temperature | 20 | 720 | < th | dose dependent | rect. | 20 | 5 |
| 728 | 209.04 | temperature | 15 | 270 | > th | dose independent | rect. | 8 | 23 |
| 769 | 209.33 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 13 |
| 796 | 209.60 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 894 | 210.67 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 20 |
| 907 | 210.78 | temperature | 20 | 720 | < th | dose dependent | sin | 19 | NA |