BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0265900 Os03g0265900|AK120374
         (162 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0265900  Conserved hypothetical protein                      334   2e-92
Os05g0451300  Conserved hypothetical protein                      164   2e-41

>Os03g0265900 Conserved hypothetical protein
          Length = 162

 Score =  334 bits (857), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MSRPARSDAHLSPEGEAAMEAEVREYYDEAAPKRHSKPSRSEPSAVYTDALVPDDSHPEL 60
           MSRPARSDAHLSPEGEAAMEAEVREYYDEAAPKRHSKPSRSEPSAVYTDALVPDDSHPEL
Sbjct: 1   MSRPARSDAHLSPEGEAAMEAEVREYYDEAAPKRHSKPSRSEPSAVYTDALVPDDSHPEL 60

Query: 61  DRFQQLEAHTEKLVCEGGKAGDEFVETEYYKDLGCVGKQHHTTGTGFIKMDKPSADASFH 120
           DRFQQLEAHTEKLVCEGGKAGDEFVETEYYKDLGCVGKQHHTTGTGFIKMDKPSADASFH
Sbjct: 61  DRFQQLEAHTEKLVCEGGKAGDEFVETEYYKDLGCVGKQHHTTGTGFIKMDKPSADASFH 120

Query: 121 LSDDPDASERHASCKGNPATNEWIPSADTVYPASDKPNRSDS 162
           LSDDPDASERHASCKGNPATNEWIPSADTVYPASDKPNRSDS
Sbjct: 121 LSDDPDASERHASCKGNPATNEWIPSADTVYPASDKPNRSDS 162



>Os05g0451300 Conserved hypothetical protein
          Length = 166

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 115/167 (68%), Gaps = 10/167 (5%)

Query: 2   SRPARSDAHLSPEGEAAMEAEVREYYDEAAPKRHSKPSRSEPS-----AVYTDALVPDDS 56
           +RPARSD HL PE  A +EAEVR Y+D  AP+R SKP RS+PS         DA   D  
Sbjct: 4   TRPARSDPHLPPEEAARVEAEVRGYFDSMAPRRPSKPPRSDPSDAGEGGAEADA---DAD 60

Query: 57  HPELDRFQQLEAHTEKLVCEGGKA-GDEFVETEYYKDLGCVGKQHHTTGTGFIKMDKPSA 115
            PEL R + LEA  +KLV +GG   G+E+VET+YY  L C+ KQHHTTGTGFIK+++P+ 
Sbjct: 61  LPELRRLRDLEAKPQKLVLDGGDVNGEEYVETQYYNGLNCIDKQHHTTGTGFIKVERPNG 120

Query: 116 DASFHLSDDPDASERHASCKGNPATNEWIPSADTVYPASDKPNRSDS 162
            +SF+++    +S+    C  NPATN+WIPS++TV P S+KP+RSDS
Sbjct: 121 -SSFNVTTVAYSSDSIIRCMSNPATNDWIPSSETVIPVSNKPSRSDS 166



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.126    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,869,300
Number of extensions: 316792
Number of successful extensions: 684
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 152 (63.2 bits)