BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0437700 Os05g0437700|AY224507
         (179 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0437700  Similar to OSE2-like protein (Fragment)             219   1e-57
Os01g0867300  Similar to OSE2-like protein (Fragment)             129   1e-30

>Os05g0437700 Similar to OSE2-like protein (Fragment)
          Length = 179

 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 119/179 (66%)

Query: 1   ARRTAEEVWKEIXXXXXXXXXXXXXXXXXXXXXXXXEMTLEDFLAREDDPRATAVEGNMV 60
           ARRTAEEVWKEI                        EMTLEDFLAREDDPRATAVEGNMV
Sbjct: 1   ARRTAEEVWKEISSSGGLSAPAPAPAAGAAGRGGGPEMTLEDFLAREDDPRATAVEGNMV 60

Query: 61  VGFPNVTEGVGTAXXXXXXXXXXXXXKRTLMDPADRAAMQRQKRMIKNRESAARSRERKQ 120
           VGFPNVTEGVGTA             KRTLMDPADRAAMQRQKRMIKNRESAARSRERKQ
Sbjct: 61  VGFPNVTEGVGTAGGGRGGGGGGRGRKRTLMDPADRAAMQRQKRMIKNRESAARSRERKQ 120

Query: 121 AYIXXXXXXXXXXXXXXXXXXXXXXXKNQKRLKEIKEQAVAVVIRKKTQDLRRTNSMEW 179
           AYI                       KNQKRLKEIKEQAVAVVIRKKTQDLRRTNSMEW
Sbjct: 121 AYIAELEAQVAELEEEHAQLLREQEEKNQKRLKEIKEQAVAVVIRKKTQDLRRTNSMEW 179



>Os01g0867300 Similar to OSE2-like protein (Fragment)
          Length = 266

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 100/201 (49%), Gaps = 31/201 (15%)

Query: 1   ARRTAEEVWKEIXXXXXXXXXXXXXXXXXXXXXXXX-----------EMTLEDFLARED- 48
           A RTAEEVWKEI                                   EMTLEDFLARE  
Sbjct: 75  APRTAEEVWKEITGAGVAAAAGGVVPPAAAAAAAPAVVAGAGAGTGAEMTLEDFLAREGA 134

Query: 49  ---------DPRATAVEGNMVVGFPNVTEGVGTAXXXXXXXXXXXXXKRTLMDPADRAAM 99
                    DP  +A +G +V+GF N  E  G               KR LMDP DRAAM
Sbjct: 135 VKEDEAVVTDP--SAAKGQVVMGFLNGAEVTGGVTGGRSR-------KRHLMDPMDRAAM 185

Query: 100 QRQKRMIKNRESAARSRERKQAYIXXXXXXXXXXXXXXXXXXXXXXXKNQKRLKEIKEQA 159
           QRQKRMIKNRESAARSRERKQAYI                       ++QKRLKE+KE  
Sbjct: 186 QRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAKMFKEQEEQHQKRLKELKEMV 245

Query: 160 VAVVIRKKT-QDLRRTNSMEW 179
           V V+IRK + +DLRRTNSMEW
Sbjct: 246 VPVIIRKTSARDLRRTNSMEW 266



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,246,155
Number of extensions: 67157
Number of successful extensions: 246
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)