BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0437500 Os05g0437500|AK102974
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0437500 Yip1 domain containing protein 375 e-104
Os01g0867700 Yip1 domain containing protein 322 2e-88
>Os05g0437500 Yip1 domain containing protein
Length = 279
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/279 (72%), Positives = 202/279 (72%)
Query: 1 MSHGDTIPLHSSSAQSDMDEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MSHGDTIPLHSSSAQSDMDEIE
Sbjct: 1 MSHGDTIPLHSSSAQSDMDEIESLIHAAPPSAAAVLPARPPSPPRASIPVSSSPPLLPPP 60
Query: 61 XAGSKPQLXXXXXXXXXXXXXXXXXXXXXXXAIAGDGFGPPPNTLTEPVLDTVKRDLARI 120
AGSKPQL AIAGDGFGPPPNTLTEPVLDTVKRDLARI
Sbjct: 61 VAGSKPQLPPFSSSSSVASSSSPPLPSSVSVAIAGDGFGPPPNTLTEPVLDTVKRDLARI 120
Query: 121 VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVXXXXXXXXX 180
VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEV
Sbjct: 121 VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAVLA 180
Query: 181 XXXXXXTLNVLLLGGRINFFQSLSLLGYCLFPLDVGALICMLKDNVLLKIIAVVVTLAWS 240
TLNVLLLGGRINFFQSLSLLGYCLFPLDVGALICMLKDNVLLKIIAVVVTLAWS
Sbjct: 181 AGAIILTLNVLLLGGRINFFQSLSLLGYCLFPLDVGALICMLKDNVLLKIIAVVVTLAWS 240
Query: 241 SWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID 279
SWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID
Sbjct: 241 SWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID 279
>Os01g0867700 Yip1 domain containing protein
Length = 272
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/187 (86%), Positives = 166/187 (88%)
Query: 93 IAGDGFGPPPNTLTEPVLDTVKRDLARIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFF 152
IA DGFGPPPNTLTEPV DTVKRDLARIVSNLKLVVFPNP+REDPGKALRDWDLWGPFFF
Sbjct: 86 IASDGFGPPPNTLTEPVWDTVKRDLARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFF 145
Query: 153 IVFLGLTLSWSASVKKSEVXXXXXXXXXXXXXXXTLNVLLLGGRINFFQSLSLLGYCLFP 212
IVFLGLTLSWSASVKKSEV TLNVLLLGG I FFQSLSLLGYCLFP
Sbjct: 146 IVFLGLTLSWSASVKKSEVFAVAFAVLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFP 205
Query: 213 LDVGALICMLKDNVLLKIIAVVVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVG 272
LDVGAL+CMLKDNV+LKII V VTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMY+SVG
Sbjct: 206 LDVGALVCMLKDNVILKIIVVTVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYISVG 265
Query: 273 FLIIAID 279
FLIIAID
Sbjct: 266 FLIIAID 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,220,163
Number of extensions: 233092
Number of successful extensions: 571
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)