Os01g0867700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Yip1 domain containing protein.
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Os01g0867700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Yip1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.06 | 0.24 | 9.96 | 0.788 | 0.161 | -1 | -0.181 | 0.799 | 0.12 | 17.7 | 20.79 | 63 | -- | -- |
| 26.56 | 0.24 | 9.98 | 0.654 | 0.159 | -0.952 | -0.0441 | -- | 0.0794 | 18.4 | 19.88 | 78 | -- | -- |
| 26.13 | 0.238 | 9.96 | 0.783 | 0.165 | -1 | -- | 0.73 | 0.118 | 17.9 | 20.8 | 63 | -- | -- |
| 26.53 | 0.24 | 9.98 | 0.653 | 0.15 | -0.956 | -- | -- | 0.0801 | 18.1 | 20.08 | 63 | -- | -- |
| 27.15 | 0.243 | 9.96 | 0.731 | -- | -0.908 | -- | 0.601 | 0.0924 | -- | 20.58 | 52 | -- | -- |
| 40.68 | 0.299 | 10 | 0.446 | 0.279 | -- | 0.14 | -- | -0.0836 | 1.48 | -- | -- | -- | -- |
| 40.75 | 0.299 | 10 | 0.442 | 0.278 | -- | -- | -- | -0.0843 | 1.42 | -- | -- | -- | -- |
| 27.37 | 0.245 | 9.98 | 0.623 | -- | -0.885 | -- | -- | 0.064 | -- | 20.08 | 63 | -- | -- |
| 36.85 | 0.283 | 10 | -- | 0.0893 | -0.748 | -- | -- | -0.0243 | 20.3 | 20.8 | 30 | -- | -- |
| 45.52 | 0.315 | 10 | 0.453 | -- | -- | -- | -- | -0.0784 | -- | -- | -- | -- | -- |
| 45.9 | 0.317 | 10 | -- | 0.286 | -- | -- | -- | -0.134 | 1.47 | -- | -- | -- | -- |
| 37.12 | 0.285 | 10 | -- | -- | -0.749 | -- | -- | -0.0246 | -- | 20.6 | 28 | -- | -- |
| 50.92 | 0.333 | 10 | -- | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 2 | 25.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 15 | 25.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 16 | 25.38 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 31 | 25.51 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 43 | 25.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 48 | 25.59 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 140 | 26.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 142 | 26.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 171 | 26.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 207 | 26.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 209 | 26.21 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 221 | 26.23 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 224 | 26.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 268 | 26.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 293 | 26.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 417 | 26.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 458 | 26.69 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 461 | 26.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 525 | 26.81 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 533 | 26.82 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 536 | 26.83 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 590 | 26.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 869 | 27.45 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 922 | 27.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 939 | 27.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 958 | 27.60 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 965 | 27.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |