BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0430400 Os05g0430400|AK063573
(371 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0430400 GTP-binding protein, HSR1-related domain conta... 701 0.0
Os11g0447300 GTP-binding protein, HSR1-related domain conta... 97 3e-20
Os01g0375000 GTP-binding protein, HSR1-related domain conta... 85 9e-17
Os03g0352400 Similar to Nucleolar GTP-binding protein 2 (Au... 80 3e-15
>Os05g0430400 GTP-binding protein, HSR1-related domain containing protein
Length = 371
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/352 (97%), Positives = 342/352 (97%)
Query: 20 GRVKAAAPLLSRRPPGRFLLRVASESSSISGDTLLGLYEKERLSHSLYANEDYDKEMFWD 79
GRVKAAAPLLSRRPPGRFLLRVASESSSISGDTLLGLYEKERLSHSLYANEDYDKEMFWD
Sbjct: 20 GRVKAAAPLLSRRPPGRFLLRVASESSSISGDTLLGLYEKERLSHSLYANEDYDKEMFWD 79
Query: 80 NLDADLRYWTRSLRPVQWYPGHIAKTXXXXXXXXXXMDVVIEVRDARIPLATSHPKMDAW 139
NLDADLRYWTRSLRPVQWYPGHIAKT MDVVIEVRDARIPLATSHPKMDAW
Sbjct: 80 NLDADLRYWTRSLRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPLATSHPKMDAW 139
Query: 140 LGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLGRMAKSLASTV 199
LGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLGRMAKSLASTV
Sbjct: 140 LGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLGRMAKSLASTV 199
Query: 200 NTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDL 259
NTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDL
Sbjct: 200 NTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDL 259
Query: 260 ELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHPAVGPEAFRRR 319
ELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHPAVGPEAFRRR
Sbjct: 260 ELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHPAVGPEAFRRR 319
Query: 320 YRLDMDSDCGKMFVTKLSVHLFNGDASQAAFRILSDYRKGKFGCVALERPPT 371
YRLDMDSDCGKMFVTKLSVHLFNGDASQAAFRILSDYRKGKFGCVALERPPT
Sbjct: 320 YRLDMDSDCGKMFVTKLSVHLFNGDASQAAFRILSDYRKGKFGCVALERPPT 371
>Os11g0447300 GTP-binding protein, HSR1-related domain containing protein
Length = 370
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 22/225 (9%)
Query: 95 VQWYPGHIAKTXXXXXXXXXXMDVVIEVRDARIPLATSHPKMDAWLGNRKRIIVMNREDM 154
V W+PGH+A D+V+EVRDARIPL++++ + L +++RI+ +N++D+
Sbjct: 23 VNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSSANEDLQPVLASKRRILALNKKDL 82
Query: 155 VSNEDRNAWASYFANQGTKVVYSNGQLGMGTMK-LGRMAKSLASTVNTKRREKGLLPRAV 213
+ N W +F + + N + LG + L ++ +E LL
Sbjct: 83 ANPNIMNRWLHHFESCKQDCISINAHSTSSVSQLLGLVEFKLKEAIS---KEPTLL---- 135
Query: 214 RAGIVGYPNVGKSSLINRLL-----------KRRMCPAAPRPGVTRELKWVRFGSD--LE 260
+VG PNVGKS+LIN + K + P PGVT+++ + S +
Sbjct: 136 -VMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISSQPSIY 194
Query: 261 LLDSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLL 305
+LD+PG+L I D +KLA+ + + +A L+ LL
Sbjct: 195 VLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLL 239
>Os01g0375000 GTP-binding protein, HSR1-related domain containing protein
Length = 591
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 117 DVVIEVRDARIPLATSHPKMDAWL----GNRKRIIVMNREDMVSNEDRNAWASYFANQGT 172
DV++EV DAR PL T M+ + +++ ++++N+ D+V E W +Y +
Sbjct: 153 DVILEVLDARDPLGTRCIDMEKMVRKADPSKRIVLLLNKIDLVPKESVEKWLTYLREEMP 212
Query: 173 KVVYSNGQLGMGTMKLGRMAKSLASTVNTKRREKGL-----------------LPRAVRA 215
V + T KLG + + + N + L L A+
Sbjct: 213 TVAFKCNTQEQRT-KLGWKSSKIDKSSNIPQSSDCLGAENLIKLLKNYSRSHELKLAITV 271
Query: 216 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLELLDSPGILPMRISDQ 275
GIVG PNVGKSSLIN L + R+ PGVTR ++ V+ ++LLD PG++ ++ S+
Sbjct: 272 GIVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKKVKLLDCPGVVMLKSSNS 331
Query: 276 TAAIKLAICDDIGERSYDFADVAAIL 301
++ L C + + + V IL
Sbjct: 332 GVSVALRNCKRVEKMEDPISPVKEIL 357
>Os03g0352400 Similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-1)
Length = 535
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 34/259 (13%)
Query: 117 DVVIEVRDARIPLAT------SHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQ 170
DVV++V DAR P+ T H K +A ++ + ++N+ D+V W +
Sbjct: 224 DVVVQVLDARDPMGTRCYHLEKHLKENA--KHKHLVFLLNKCDLVPAWATKGWLRTLSKD 281
Query: 171 GTKVVYS---NGQLGMGTMKLGRMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSS 227
+ + N G G+ L + + A + K+ A+ G VGYPNVGKSS
Sbjct: 282 YPTLAFHASINSSFGKGS--LLSVLRQFARLKSDKQ--------AISVGFVGYPNVGKSS 331
Query: 228 LINRLLKRRMCPAAPRPGVTRELKWVRFGSDLELLDSPGILPMRISDQTAAIKLAICDDI 287
+IN L + +C AP PG T+ +++ + L+D PG++ +T + +
Sbjct: 332 VINTLRSKSVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNNDSETDIVLKGVV--- 388
Query: 288 GERSYDFADVAAILVQLLVRHPAVGPEAFRRRYRLD--MDSDCGKMFVTKLSVHLFNG-- 343
R + AD + + ++L R V E +R Y+++ +D + + ++K + L G
Sbjct: 389 --RVTNLADASEHIGEVLRR---VKKEHLKRAYKIEDWVDDNDFLVQLSKTTGKLLRGGE 443
Query: 344 -DASQAAFRILSDYRKGKF 361
D + A +L D+++GK
Sbjct: 444 PDLTTTAKMVLHDWQRGKI 462
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,060,599
Number of extensions: 487000
Number of successful extensions: 1187
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1183
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)