Os03g0352400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-1).
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Os03g0352400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.11 | 0.258 | 13 | 0.692 | 0.222 | 1.26 | 0.779 | -1.52 | 0.225 | 1.26 | 18.81 | 2377 | -- | -- |
| 31.95 | 0.263 | 12.9 | 1.12 | 0.238 | 1.25 | 0.701 | -- | 0.317 | 1.11 | 17.9 | 2346 | -- | -- |
| 32.55 | 0.266 | 13 | 0.703 | 0.224 | 1.27 | -- | -1.36 | 0.228 | 1.26 | 18.6 | 2376 | -- | -- |
| 33.66 | 0.27 | 12.9 | 1.07 | 0.243 | 1.27 | -- | -- | 0.33 | 1.8 | 17.89 | 2274 | -- | -- |
| 35.35 | 0.277 | 13 | 0.706 | -- | 1.3 | -- | -1.28 | 0.227 | -- | 18.8 | 2435 | -- | -- |
| 68.34 | 0.388 | 12.9 | 1.59 | 0.378 | -- | 0.717 | -- | 0.611 | 0.701 | -- | -- | -- | -- |
| 70.53 | 0.393 | 12.9 | 1.56 | 0.376 | -- | -- | -- | 0.607 | 0.681 | -- | -- | -- | -- |
| 36.54 | 0.282 | 12.9 | 1.06 | -- | 1.31 | -- | -- | 0.322 | -- | 17.9 | 2403 | -- | -- |
| 47.54 | 0.321 | 13 | -- | 0.311 | 1.82 | -- | -- | -0.0273 | 0.173 | 11.15 | 11207 | -- | -- |
| 79.4 | 0.416 | 12.9 | 1.58 | -- | -- | -- | -- | 0.614 | -- | -- | -- | -- | -- |
| 135.08 | 0.544 | 12.9 | -- | 0.401 | -- | -- | -- | 0.433 | 0.865 | -- | -- | -- | -- |
| 50.66 | 0.331 | 13 | -- | -- | 1.68 | -- | -- | -0.0267 | -- | 10.2 | 22626 | -- | -- |
| 145.11 | 0.562 | 12.9 | -- | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 14 |
| 2 | 29.06 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 6 | 29.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 17 | 29.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 20 | 29.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 178 | 30.20 | temperature | 20 | 4320 | > th | dose dependent | sin | 14 | NA |
| 277 | 30.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 351 | 30.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 496 | 31.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 524 | 31.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 641 | 31.44 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 736 | 31.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 838 | 31.67 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 840 | 31.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 845 | 31.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 876 | 31.70 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 952 | 31.78 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 962 | 31.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 13 |