BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0352400 Os03g0352400|AK105418
(535 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0352400 Similar to Nucleolar GTP-binding protein 2 (Au... 1078 0.0
Os01g0375000 GTP-binding protein, HSR1-related domain conta... 207 2e-53
Os12g0618300 Similar to GTP-binding protein-like (Fragment) 140 3e-33
Os05g0430400 GTP-binding protein, HSR1-related domain conta... 82 1e-15
>Os03g0352400 Similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-1)
Length = 535
Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/535 (97%), Positives = 523/535 (97%)
Query: 1 MAKKKERAVNVSGKPRHSLDVNRANDKKXXXXXXXXXXXXRSAATVRRLKMYKMRPLRDR 60
MAKKKERAVNVSGKPRHSLDVNRANDKK RSAATVRRLKMYKMRPLRDR
Sbjct: 1 MAKKKERAVNVSGKPRHSLDVNRANDKKGAGGGAGGGGGGRSAATVRRLKMYKMRPLRDR 60
Query: 61 GGKILKHDLQSKELPNTRIEPDRRWFGNTRVVNQKELEFFREELQSRLSNNYNVILKERK 120
GGKILKHDLQSKELPNTRIEPDRRWFGNTRVVNQKELEFFREELQSRLSNNYNVILKERK
Sbjct: 61 GGKILKHDLQSKELPNTRIEPDRRWFGNTRVVNQKELEFFREELQSRLSNNYNVILKERK 120
Query: 121 LPLSLLQDHQKQARAHLLDTEPFEHAFGPKGKRKRPKLMALDYESLLKKADDSQGAFEDK 180
LPLSLLQDHQKQARAHLLDTEPFEHAFGPKGKRKRPKLMALDYESLLKKADDSQGAFEDK
Sbjct: 121 LPLSLLQDHQKQARAHLLDTEPFEHAFGPKGKRKRPKLMALDYESLLKKADDSQGAFEDK 180
Query: 181 HATAKLLKEEEEDGLRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRC 240
HATAKLLKEEEEDGLRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRC
Sbjct: 181 HATAKLLKEEEEDGLRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRC 240
Query: 241 YHLEKHLKENAKHKHLVFLLNKCDLVPAWATKGWLRTLSKDYPTLAFHASINSSFGKGSL 300
YHLEKHLKENAKHKHLVFLLNKCDLVPAWATKGWLRTLSKDYPTLAFHASINSSFGKGSL
Sbjct: 241 YHLEKHLKENAKHKHLVFLLNKCDLVPAWATKGWLRTLSKDYPTLAFHASINSSFGKGSL 300
Query: 301 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLT 360
LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLT
Sbjct: 301 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLT 360
Query: 361 KRIFLIDCPGVVYQNNDSETDIVLKGVVRVTNLADASEHIGEVLRRVKKEHLKRAYKIED 420
KRIFLIDCPGVVYQNNDSETDIVLKGVVRVTNLADASEHIGEVLRRVKKEHLKRAYKIED
Sbjct: 361 KRIFLIDCPGVVYQNNDSETDIVLKGVVRVTNLADASEHIGEVLRRVKKEHLKRAYKIED 420
Query: 421 WVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFFVPPPQQGEDSPSETA 480
WVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFFVPPPQQGEDSPSETA
Sbjct: 421 WVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFFVPPPQQGEDSPSETA 480
Query: 481 EPVEKSDEEGVSSDRTAAAMKAIAGIISSQQQMNVPCQKEFGVTNEDSEVAEQSE 535
EPVEKSDEEGVSSDRTAAAMKAIAGIISSQQQMNVPCQKEFGVTNEDSEVAEQSE
Sbjct: 481 EPVEKSDEEGVSSDRTAAAMKAIAGIISSQQQMNVPCQKEFGVTNEDSEVAEQSE 535
>Os01g0375000 GTP-binding protein, HSR1-related domain containing protein
Length = 591
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 191/346 (55%), Gaps = 38/346 (10%)
Query: 153 RKRPKLMALDYESL--LKKADDSQGA-FEDKHATAKLLKEEEEDGLRDLVRHTMFEKGQS 209
RKR KL L+ E + L A +QG+ F +K A +E+ D+V+ +
Sbjct: 90 RKR-KLGLLEDEDIANLASAASAQGSEFAEKDAA-------KENASLDVVKS---QDHSE 138
Query: 210 KRIWGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLNKCDLVPAW 269
+ + EL KVI++SDV+++VLDARDP+GTRC +EK +++ K +V LLNK DLVP
Sbjct: 139 RAFYKELVKVIEASDVILEVLDARDPLGTRCIDMEKMVRKADPSKRIVLLLNKIDLVPKE 198
Query: 270 ATKGWLRTLSKDYPTLAFHASI-----------------------NSSFGKGSLLSVLRQ 306
+ + WL L ++ PT+AF + + G +L+ +L+
Sbjct: 199 SVEKWLTYLREEMPTVAFKCNTQEQRTKLGWKSSKIDKSSNIPQSSDCLGAENLIKLLKN 258
Query: 307 FARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLTKRIFLI 366
++R K AI+VG VG PNVGKSS+IN+L+ V V PG T+ Q + L K++ L+
Sbjct: 259 YSRSHELKLAITVGIVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKKVKLL 318
Query: 367 DCPGVVY-QNNDSETDIVLKGVVRVTNLADASEHIGEVLRRVKKEHLKRAYKIEDWVDDN 425
DCPGVV ++++S + L+ RV + D + E+L E L Y++ + +
Sbjct: 319 DCPGVVMLKSSNSGVSVALRNCKRVEKMEDPISPVKEILDLCPHEKLLSLYRVPTFTSVD 378
Query: 426 DFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFFVPPPQQ 471
DFL +++ GKL +GG D+ A++VLHDW GKIP+F PP++
Sbjct: 379 DFLQKVATLRGKLKKGGIVDVEAAARIVLHDWNEGKIPYFTVPPKR 424
>Os12g0618300 Similar to GTP-binding protein-like (Fragment)
Length = 598
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 156/330 (47%), Gaps = 67/330 (20%)
Query: 202 TMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLN 261
T FEK IW +L++V++ SD++V V+DARDP+ RC LE + KE +HK + L+N
Sbjct: 154 TPFEKNID--IWRQLWRVLERSDLLVMVVDARDPLFYRCPDLEVYAKEIDEHKRTMILVN 211
Query: 262 KCDLVPA-------------------WATKGWLRTLS---------KDYPTLAFHASINS 293
K DL+P W+ K TL +D +L I
Sbjct: 212 KADLLPMNIRKKWADYFKAHDILYVFWSAKAATATLEGKILSGYSEQDSASLDLDTKI-- 269
Query: 294 SFGKGSLLSVL----------RQFARLKSDKQAIS------------VGFVGYPNVGKSS 331
+G+ LL L R+ A +K D +A S VGFVGYPNVGKSS
Sbjct: 270 -YGRDELLKKLQTEAEFIVAQRRAAAIKEDSRATSSDSVSSVAKHVVVGFVGYPNVGKSS 328
Query: 332 VINTLRSKSVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN-NDSETDIVLKGVVRV 390
IN L + V PG+TK +Q + +++ + L DCPG+V+ + + S ++V GV+ +
Sbjct: 329 TINALVGEKKTGVTHTPGKTKHFQTLIISEELTLCDCPGLVFPSFSSSRHEMVSCGVLPI 388
Query: 391 TNLADASEHIGEVLRRVKKEHLKRAYKI-----EDWVDDN------DFLVQLSKTTGKLL 439
+ E I V RV + L++ YKI + + + + L + G +
Sbjct: 389 DRMTKHREAIQVVADRVPRSVLEQIYKITLPKPKPYESQSRPPTAAELLRAYCASRGHVS 448
Query: 440 RGGEPDLTTTAKMVLHDWQRGKIPFFVPPP 469
G PD T A+ +L D+ GKIP F PP
Sbjct: 449 HAGLPDETRAARQILKDYIDGKIPHFELPP 478
>Os05g0430400 GTP-binding protein, HSR1-related domain containing protein
Length = 371
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 34/284 (11%)
Query: 199 VRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENA--KHKHL 256
+R + G + EL + + DVV++V DAR P+ T H K +A ++
Sbjct: 92 LRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPLAT------SHPKMDAWLGNRKR 145
Query: 257 VFLLNKCDLVPAWATKGWLRTLSKDYPTLAFHASINSSFGKG---------SLLSVLRQF 307
+ ++N+ D+V W + + + N G G SL S +
Sbjct: 146 IIVMNREDMVSNEDRNAWASYFANQGTKVVYS---NGQLGMGTMKLGRMAKSLASTVNTK 202
Query: 308 ARLKSD-KQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLTKRIFLI 366
R K +A+ G VGYPNVGKSS+IN L + +C AP PG T+ +++ + L+
Sbjct: 203 RREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLELL 262
Query: 367 DCPGVVYQNNDSETDIVLKGVV-----RVTNLADASEHIGEVLRR---VKKEHLKRAYKI 418
D PG++ +T + + R + AD + + ++L R V E +R Y++
Sbjct: 263 DSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHPAVGPEAFRRRYRL 322
Query: 419 EDWVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKI 462
+ +D + + ++K + L G D + A +L D+++GK
Sbjct: 323 D--MDSDCGKMFVTKLSVHLFNG---DASQAAFRILSDYRKGKF 361
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,649,101
Number of extensions: 735250
Number of successful extensions: 2704
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2699
Number of HSP's successfully gapped: 4
Length of query: 535
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 429
Effective length of database: 11,501,117
Effective search space: 4933979193
Effective search space used: 4933979193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)