Os05g0430400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding protein, HSR1-related domain containing protein.
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Os05g0430400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP-binding protein, HSR1-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.6 | 0.344 | 12.9 | -1.07 | 1.35 | 1.54 | -0.465 | -1.91 | -0.587 | 22.8 | 21 | 259 | -- | -- |
| 56.22 | 0.349 | 12.9 | -0.702 | 1.37 | 1.41 | -0.325 | -- | -0.492 | 22.6 | 20.7 | 245 | -- | -- |
| 54.48 | 0.344 | 12.9 | -1.04 | 1.35 | 1.54 | -- | -1.77 | -0.583 | 22.8 | 20.98 | 259 | -- | -- |
| 56.69 | 0.351 | 12.9 | -0.68 | 1.38 | 1.41 | -- | -- | -0.476 | 22.7 | 20.7 | 243 | -- | -- |
| 110.51 | 0.49 | 12.9 | -1.4 | -- | 2.11 | -- | -2.41 | -0.735 | -- | 21.3 | 726 | -- | -- |
| 90.01 | 0.445 | 12.8 | -0.392 | 1.46 | -- | -0.68 | -- | -0.24 | 21.2 | -- | -- | -- | -- |
| 91.62 | 0.448 | 12.8 | -0.369 | 1.46 | -- | -- | -- | -0.24 | 21.2 | -- | -- | -- | -- |
| 114.34 | 0.498 | 12.9 | -1 | -- | 2.28 | -- | -- | -0.629 | -- | 16.9 | 721 | -- | -- |
| 68.28 | 0.385 | 12.9 | -- | 1.38 | 1.22 | -- | -- | -0.373 | 22.5 | 21 | 234 | -- | -- |
| 215.23 | 0.686 | 12.8 | -0.364 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 95.21 | 0.456 | 12.8 | -- | 1.46 | -- | -- | -- | -0.199 | 21.2 | -- | -- | -- | -- |
| 133.77 | 0.539 | 12.8 | -- | -- | 1.72 | -- | -- | -0.456 | -- | 21.28 | 717 | -- | -- |
| 218.72 | 0.69 | 12.8 | -- | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 2 | 52.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 3 | 52.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 5 | 52.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 7 | 52.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 15 | 52.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 25 | 52.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 35 | 53.19 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 80 | 54.02 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 83 | 54.05 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 87 | 54.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 89 | 54.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 17 |
| 91 | 54.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 97 | 54.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 110 | 54.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 116 | 54.26 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 174 | 54.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 175 | 54.46 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 180 | 54.47 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 259 | 54.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 309 | 54.78 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 315 | 54.79 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 322 | 54.81 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 336 | 54.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 359 | 54.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 366 | 54.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 372 | 54.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 428 | 55.01 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 465 | 55.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 473 | 55.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 566 | 55.25 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 621 | 55.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 622 | 55.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 637 | 55.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 642 | 55.40 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 653 | 55.43 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 712 | 55.54 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 793 | 55.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 834 | 55.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 836 | 55.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 853 | 55.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 935 | 55.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 11 |