BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0423200 Os05g0423200|AK110840
         (391 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0423200  Conserved hypothetical protein                      811   0.0  
Os04g0539100  Conserved hypothetical protein                       87   2e-17
Os04g0221000  Conserved hypothetical protein                       75   9e-14

>Os05g0423200 Conserved hypothetical protein
          Length = 391

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/391 (100%), Positives = 391/391 (100%)

Query: 1   MKAQDMVSRSSCSKNKVFGSLPVDSIPEIDPSYRLFLEHLREDGNGYVLDAPRGDHGSPV 60
           MKAQDMVSRSSCSKNKVFGSLPVDSIPEIDPSYRLFLEHLREDGNGYVLDAPRGDHGSPV
Sbjct: 1   MKAQDMVSRSSCSKNKVFGSLPVDSIPEIDPSYRLFLEHLREDGNGYVLDAPRGDHGSPV 60

Query: 61  FLRYAQDHASNGYANAKSGTNITKSSLRRSHCNQNSEGPGVTSDKAGSANAGHCFSLGTS 120
           FLRYAQDHASNGYANAKSGTNITKSSLRRSHCNQNSEGPGVTSDKAGSANAGHCFSLGTS
Sbjct: 61  FLRYAQDHASNGYANAKSGTNITKSSLRRSHCNQNSEGPGVTSDKAGSANAGHCFSLGTS 120

Query: 121 FAMETSEIDESYATFLRLLKIKNGLMVIEPEPGVTIVYGQAEETPVGYDELRIATSTNGR 180
           FAMETSEIDESYATFLRLLKIKNGLMVIEPEPGVTIVYGQAEETPVGYDELRIATSTNGR
Sbjct: 121 FAMETSEIDESYATFLRLLKIKNGLMVIEPEPGVTIVYGQAEETPVGYDELRIATSTNGR 180

Query: 181 DSLMTAFENMGEENAMNTDGDGLGKINNSASEREMDGLALENMGGQDLVCIDEHGLPPCT 240
           DSLMTAFENMGEENAMNTDGDGLGKINNSASEREMDGLALENMGGQDLVCIDEHGLPPCT
Sbjct: 181 DSLMTAFENMGEENAMNTDGDGLGKINNSASEREMDGLALENMGGQDLVCIDEHGLPPCT 240

Query: 241 ELSDLNVCGDEQGEPLALSCGIPSTFDEKLNDVLSKPYDLNEYKELLRKATDRKLVSRQR 300
           ELSDLNVCGDEQGEPLALSCGIPSTFDEKLNDVLSKPYDLNEYKELLRKATDRKLVSRQR
Sbjct: 241 ELSDLNVCGDEQGEPLALSCGIPSTFDEKLNDVLSKPYDLNEYKELLRKATDRKLVSRQR 300

Query: 301 HLRNASKPYATRAVGLSFLDHYPDLAIQIDSADSDERKLCLLRKFFFWLENLCHEGAYMP 360
           HLRNASKPYATRAVGLSFLDHYPDLAIQIDSADSDERKLCLLRKFFFWLENLCHEGAYMP
Sbjct: 301 HLRNASKPYATRAVGLSFLDHYPDLAIQIDSADSDERKLCLLRKFFFWLENLCHEGAYMP 360

Query: 361 WIDKPLACNPIDADDYETDDPTAIEIIQDGD 391
           WIDKPLACNPIDADDYETDDPTAIEIIQDGD
Sbjct: 361 WIDKPLACNPIDADDYETDDPTAIEIIQDGD 391



>Os04g0539100 Conserved hypothetical protein
          Length = 331

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 1/100 (1%)

Query: 264 STFDEKLNDVLSKPYDLNEYKELLRKATDRKLVSRQRHLRNASKPYATRAVGLSFLDHYP 323
           S F ++L D LSKP+   EY +L   A+ R  + + R +RN  K Y T+ +G S+ DHYP
Sbjct: 221 SDFKQRLLDALSKPFSRKEYIKLFDMASIRTPLVKLRQVRNDVKFYPTQEMGNSYFDHYP 280

Query: 324 DLAIQIDSADSDERKLCLLRKFFFWLENLCHEGAYMPWID 363
           DL  Q+    S    L L+R FFFWL+N  HE  + PW+D
Sbjct: 281 DLVDQVMHT-SFPNGLALMRGFFFWLQNNAHEDQFRPWVD 319



>Os04g0221000 Conserved hypothetical protein
          Length = 451

 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 255 PLALSCGIPSTFDEKLNDVLSKPYDLNEYKELLRKATDRKLVSRQRHLRNASKPYATR-A 313
           P+ ++    S F ++L  VL+KP+   EY +L   AT R  ++R+R  R   K Y ++  
Sbjct: 333 PIHINDREESDFKQRLIHVLNKPFSQGEYDKLFGMATIRNPLTRERRTRCGVKYYYSQHE 392

Query: 314 VGLSFLDHYPDLAIQIDSADSDERKLCLLRKFFFWLENLCHEGAYMPWID 363
              S+ D YPDLA Q++ A    R L LLR  FFWLEN+  +  + PW D
Sbjct: 393 KAKSYFDCYPDLAKQVEEASYPNR-LALLRGLFFWLENIGQDDQFRPWRD 441



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,591,197
Number of extensions: 667722
Number of successful extensions: 1295
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 288
Effective length of database: 11,657,759
Effective search space: 3357434592
Effective search space used: 3357434592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)