Os04g0539100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0539100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.52 | 0.31 | 9.61 | 0.0309 | 1.16 | -0.421 | -0.067 | 2.59 | -0.39 | 9.57 | 9.991 | 1471 | -- | -- |
| 54.44 | 0.344 | 9.62 | 0.0445 | 1.16 | -0.42 | -0.164 | -- | -0.393 | 9.59 | 10 | 1535 | -- | -- |
| 43.49 | 0.307 | 9.61 | 0.0379 | 1.16 | -0.425 | -- | 2.6 | -0.39 | 9.53 | 10 | 1487 | -- | -- |
| 54.08 | 0.343 | 9.63 | 0.103 | 1.19 | -0.444 | -- | -- | -0.368 | 9.57 | 9.999 | 1534 | -- | -- |
| 96.49 | 0.46 | 9.64 | 0.131 | -- | -0.663 | -- | 0.495 | -0.256 | -- | 10 | 1621 | -- | -- |
| 58.58 | 0.359 | 9.63 | 0.0423 | 1.19 | -- | -0.202 | -- | -0.321 | 9.68 | -- | -- | -- | -- |
| 58.73 | 0.359 | 9.63 | 0.0344 | 1.19 | -- | -- | -- | -0.322 | 9.66 | -- | -- | -- | -- |
| 83.69 | 0.428 | 9.67 | 0.0505 | -- | -0.73 | -- | -- | -0.375 | -- | 3.51 | 1622 | -- | -- |
| 54.28 | 0.343 | 9.63 | -- | 1.15 | -0.438 | -- | -- | -0.375 | 9.6 | 9.99 | 1538 | -- | -- |
| 142.69 | 0.558 | 9.66 | 0.0241 | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
| 58.76 | 0.359 | 9.63 | -- | 1.19 | -- | -- | -- | -0.325 | 9.66 | -- | -- | -- | -- |
| 83.33 | 0.427 | 9.67 | -- | -- | -0.728 | -- | -- | -0.368 | -- | 2.976 | 1620 | -- | -- |
| 142.7 | 0.558 | 9.66 | -- | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 2 | 38.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 10 | 38.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 12 | 39.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 18 | 39.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 31 | 39.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 32 | 39.38 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 33 | 39.39 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 36 | 39.40 | radiation | 40 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 39 | 39.42 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 65 | 39.81 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 69 | 39.84 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 75 | 39.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 87 | 40.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 116 | 40.58 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 131 | 40.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 136 | 40.82 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 158 | 40.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 159 | 40.94 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 160 | 40.94 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 164 | 40.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 166 | 40.97 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 170 | 40.99 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 171 | 40.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 179 | 41.08 | radiation | 10 | 1440 | < th | dose independent | sin | 13 | NA |
| 182 | 41.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 200 | 41.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 202 | 41.23 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 206 | 41.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 207 | 41.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 216 | 41.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 218 | 41.31 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 227 | 41.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 235 | 41.35 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 247 | 41.37 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 14 |
| 261 | 41.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 275 | 41.45 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 295 | 41.48 | temperature | 15 | 43200 | < th | dose dependent | sin | 1 | NA |
| 322 | 41.55 | humidity | 80 | 43200 | > th | dose dependent | sin | 2 | NA |
| 337 | 41.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 344 | 41.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 404 | 41.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 410 | 41.73 | temperature | 15 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 421 | 41.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 445 | 41.81 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 455 | 41.82 | temperature | 15 | 43200 | < th | dose dependent | rect. | 12 | 8 |
| 464 | 41.84 | temperature | 15 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 469 | 41.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 478 | 41.86 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 505 | 41.88 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 507 | 41.88 | temperature | 15 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 523 | 41.90 | temperature | 15 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 553 | 41.92 | temperature | 15 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 557 | 41.92 | temperature | 15 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 569 | 41.93 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 570 | 41.93 | humidity | 90 | 43200 | < th | dose independent | sin | 3 | NA |
| 727 | 42.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 745 | 42.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 836 | 42.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 857 | 42.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 18 |
| 874 | 42.14 | temperature | 15 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 884 | 42.15 | humidity | 90 | 43200 | > th | dose independent | sin | 4 | NA |
| 903 | 42.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 907 | 42.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 914 | 42.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 974 | 42.23 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 985 | 42.24 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 988 | 42.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 20 |