BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0539100 Os04g0539100|AK069820
         (331 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77270.1  | chr1:29028342-29031068 FORWARD LENGTH=683           81   9e-16
AT3G07730.1  | chr3:2468185-2469606 FORWARD LENGTH=474             66   3e-11
AT4G01170.1  | chr4:499497-500831 FORWARD LENGTH=445               64   1e-10
AT1G21560.2  | chr1:7555208-7556789 FORWARD LENGTH=400             62   6e-10

>AT1G77270.1 | chr1:29028342-29031068 FORWARD LENGTH=683
          Length = 682

 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 6/104 (5%)

Query: 220 DSDFKQRLLDALSKPFSRKEYIKLFDMASIRTPLVKLRQVRN--DVKFYPTQEMGNSYFD 277
           +S F ++L++ L  P+  KE+++L++ AS++ PL K RQ+R+  ++++Y   +   SY +
Sbjct: 570 NSSFSKKLMEILRNPYDEKEFLRLYNEASVKRPLTKSRQLRDGREIEYYCDDQFALSYLE 629

Query: 278 HYPDLVDQVMH---TSFPNGLALMRGFFFWLQNNAHEDQFRPWV 318
            Y D  ++  H      P  L L+RGFFF+L+N   E  F+PW+
Sbjct: 630 KYTDF-NKTYHRYRKDLPRALNLLRGFFFYLENIVLEGAFKPWL 672



>AT3G07730.1 | chr3:2468185-2469606 FORWARD LENGTH=474
          Length = 473

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 216 NSRPDSDFKQRLLDALSKPFSRKEYIKLFDMASIRTPLVKLRQVRNDVKF-YPTQEMGNS 274
           N    S F++ L+D L  P+   E  +L    SI   + + R++R      Y T E+G S
Sbjct: 360 NESSSSWFRKELMDVLKNPYDEGEMKQLHRYVSIHKKMTRCRELRKGRGSDYETDELGQS 419

Query: 275 YFDHYPDLVDQ---VMHTSFPNGLALMRGFFFWLQNNAHEDQFRPW 317
           Y + +PD   +   V+       L L+RGFFF+L+  +H+  F+PW
Sbjct: 420 YLESFPDFEKEYKLVVGVDKARALKLLRGFFFYLKYVSHDGVFKPW 465



>AT4G01170.1 | chr4:499497-500831 FORWARD LENGTH=445
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 223 FKQRLLDALSKPFSRKEYIKLFDMASIRTPLVKLRQVRNDV-KFYPTQEMGNSYFDHYPD 281
           F++ L+D L +P+  +E  +L    SI   + + R++R      Y T E+G SY + +PD
Sbjct: 337 FRKELMDVLKQPYDEEEMKQLHRDVSIHRKMTRCRELRKGRGSVYETGELGQSYLESFPD 396

Query: 282 LVDQ----VMHTSFPNGLALMRGFFFWLQNNAHEDQFRPW 317
              +    V        L L+RGFFF+L+  +H+  F+PW
Sbjct: 397 FEKEYKLVVGVDDKARALKLLRGFFFYLKYVSHDGVFKPW 436



>AT1G21560.2 | chr1:7555208-7556789 FORWARD LENGTH=400
          Length = 399

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 199 GPSIPPGSQGVI-WPAHINSRPDSDFKQRLLDALSKPFSRKEYIKLFDMASIRTPLVKLR 257
            P +P  S  VI      + + +S F++ +++ L +P++  E  +L   AS+     +  
Sbjct: 264 SPFVPSKSYKVIDLDEESSDQRNSWFRREIMNVLKQPYTVTELKELHKEASVHGVSSRHI 323

Query: 258 QVRNDVKF-YPTQEMGNSYFDHYPDL----VDQVMHTSFPNGLALMRGFFFWLQNNAHED 312
           ++R+  +F +PT +   SY D YPD     +D +        L L+RGF F++ N   +D
Sbjct: 324 ELRDGTEFSFPTNKKKPSYLDRYPDFKKQYLDSLREKDERKALNLLRGFIFYITNVVRDD 383

Query: 313 QFRPWVD 319
            F+PW+D
Sbjct: 384 AFKPWLD 390



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,908,349
Number of extensions: 343731
Number of successful extensions: 1021
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1015
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,392,385
Effective search space: 1947033320
Effective search space used: 1947033320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)