Os05g0423200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0423200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.6 | 0.256 | 8.69 | 0.856 | 0.886 | -0.581 | -0.721 | -0.272 | 0.401 | 2.55 | -0.001682 | 97 | -- | -- |
| 29.67 | 0.254 | 8.69 | 0.855 | 0.892 | -0.563 | -0.57 | -- | 0.401 | 2.52 | -3.98 | 100 | -- | -- |
| 30.48 | 0.257 | 8.69 | 0.862 | 0.902 | -0.529 | -- | 0.382 | 0.401 | 2.38 | -3.28 | 114 | -- | -- |
| 30.8 | 0.258 | 8.69 | 0.871 | 0.888 | -0.557 | -- | -- | 0.404 | 2.41 | -2.876 | 112 | -- | -- |
| 47.07 | 0.32 | 8.66 | 0.959 | -- | -1.37 | -- | 0.275 | 0.485 | -- | -7.106 | 226 | -- | -- |
| 33.49 | 0.271 | 8.7 | 0.85 | 1.2 | -- | -0.531 | -- | 0.371 | 2.06 | -- | -- | -- | -- |
| 34.55 | 0.275 | 8.7 | 0.866 | 1.2 | -- | -- | -- | 0.375 | 2.02 | -- | -- | -- | -- |
| 47.22 | 0.32 | 8.67 | 0.926 | -- | -1.39 | -- | -- | 0.477 | -- | -7.22 | 226 | -- | -- |
| 50.8 | 0.332 | 8.71 | -- | 0.959 | -0.488 | -- | -- | 0.309 | 2.28 | 3.134 | 98 | -- | -- |
| 120.4 | 0.513 | 8.69 | 0.916 | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
| 54.32 | 0.345 | 8.72 | -- | 1.21 | -- | -- | -- | 0.278 | 2.04 | -- | -- | -- | -- |
| 69.46 | 0.388 | 8.69 | -- | -- | -1.39 | -- | -- | 0.363 | -- | -2.618 | 187 | -- | -- |
| 142.52 | 0.557 | 8.71 | -- | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.19 | temperature | 15 | 10 | > th | dose dependent | sin | 2 | NA |
| 16 | 29.42 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 19 | 29.45 | radiation | 10 | 270 | > th | dose independent | sin | 4 | NA |
| 21 | 29.49 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 32 | 29.54 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 34 | 29.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 13 |
| 41 | 29.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 43 | 29.60 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 44 | 29.60 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 65 | 29.69 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 66 | 29.69 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 152 | 29.72 | radiation | 40 | 30 | < th | dose dependent | rect. | 18 | 23 |
| 155 | 29.74 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 20 |
| 159 | 29.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 13 |
| 170 | 29.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 180 | 29.82 | radiation | 10 | 270 | > th | dose independent | rect. | 15 | 22 |
| 182 | 29.82 | radiation | 10 | 90 | > th | dose dependent | rect. | 6 | 8 |
| 222 | 29.83 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 228 | 29.84 | radiation | 40 | 30 | < th | dose dependent | sin | 2 | NA |
| 233 | 29.85 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 11 |
| 240 | 29.87 | radiation | 20 | 30 | > th | dose independent | sin | 2 | NA |
| 248 | 29.87 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 340 | 29.89 | radiation | 40 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 342 | 29.90 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 5 |
| 444 | 29.95 | humidity | 60 | 10 | > th | dose dependent | sin | 0 | NA |
| 464 | 29.96 | humidity | 70 | 90 | > th | dose dependent | sin | 0 | NA |
| 532 | 29.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 537 | 30.00 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 543 | 30.00 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 563 | 30.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 635 | 30.05 | radiation | 20 | 270 | < th | dose independent | sin | 7 | NA |