BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0410100 Os05g0410100|AK108696
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0410100  Conserved hypothetical protein                      266   9e-72
Os12g0135700  Conserved hypothetical protein                       78   6e-15

>Os05g0410100 Conserved hypothetical protein
          Length = 205

 Score =  266 bits (679), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 142/183 (77%)

Query: 1   MPRLTSTSTSLPAVRSASQYSRLVSRMRSCXXXXXXXXXXXXXXXXXXXXPIGHVYGWSL 60
           MPRLTSTSTSLPAVRSASQYSRLVSRMRSC                    PIGHVYGWSL
Sbjct: 1   MPRLTSTSTSLPAVRSASQYSRLVSRMRSCSATATSSGGSGTDSSGGAFGPIGHVYGWSL 60

Query: 61  VAPSGSAMARNLSSMSRVKNTESGLGSSSDLLRVACTNPGWSGMPPATRRGAQLSAPSSP 120
           VAPSGSAMARNLSSMSRVKNTESGLGSSSDLLRVACTNPGWSGMPPATRRGAQLSAPSSP
Sbjct: 61  VAPSGSAMARNLSSMSRVKNTESGLGSSSDLLRVACTNPGWSGMPPATRRGAQLSAPSSP 120

Query: 121 TRAPTWWTRLPPELSPMRNTREKXXXXXXXXXXXXXXXXXXXXXMERSRRSPSTPVSMCA 180
           TRAPTWWTRLPPELSPMRNTREK                     MERSRRSPSTPVSMCA
Sbjct: 121 TRAPTWWTRLPPELSPMRNTREKSAAVRRSSAAGSPRAAASDSAMERSRRSPSTPVSMCA 180

Query: 181 GRR 183
           GRR
Sbjct: 181 GRR 183



>Os12g0135700 Conserved hypothetical protein
          Length = 190

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 72/132 (54%), Gaps = 2/132 (1%)

Query: 53  GHVYGWSL-VAPSGSAMARNLSSMSRVKNTESGLGSSSDLLRVACTNPGWSGMPPATRRG 111
           G VYGWSL V P+G+A   NLS++S V N   G  SSSD L      PGW   PPA R G
Sbjct: 37  GDVYGWSLLVVPTGNASMTNLSTVSCVMNGVGGF-SSSDGLFSGKMKPGWRRTPPARRIG 95

Query: 112 AQLSAPSSPTRAPTWWTRLPPELSPMRNTREKXXXXXXXXXXXXXXXXXXXXXMERSRRS 171
           ++ SAP+SP RA T  TR PP LSPMRNTREK                       RS+ S
Sbjct: 96  SRASAPASPARAATLCTRTPPALSPMRNTREKSAASRRRSTAWCAMVSLVPHATSRSQSS 155

Query: 172 PSTPVSMCAGRR 183
            + P SM AGRR
Sbjct: 156 AACPASMAAGRR 167



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.123    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,256,760
Number of extensions: 190445
Number of successful extensions: 1041
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)