FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0135700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.11 (0.0519) R2 : 0.495
β1 : -1.48 (0.189) R2dD : 0.0715 R2D : -0.0843
β2 : 0.896 (0.126) R2dC : 0.056 R2C : -0.057
β3 : 2.14 (0.27) R2dE : 0.12 R2E : -0.0392
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.1 (1.19) R2dD*E : 0.134 R2D*E : -0.178
γ1 : -1.78 (0.112) R2dN8 : 0.394 R2N8 : 0.275
σ : 0.957
deviance : 422.57
__
_____
C
peak time of C : 9.24
E
wheather : wind
threshold : 5.152
memory length : 3595
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.8
open length of G : 6.96

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
421.45 0.965 6.11 -1.48 0.9 2.19 0.587 10.3 -1.78 9.29 5.193 3588 19.8 7.02
480.31 1.02 5.96 -1.19 0.821 1.21 0.949 -- -1.62 8.72 6.207 10791 19.9 7.3
422.57 0.957 6.11 -1.48 0.896 2.14 -- 10.1 -1.78 9.24 5.152 3595 19.8 6.96
466.72 1.01 6 -1.26 0.971 1.38 -- -- -1.72 9.21 8.009 10715 20 7.67
468.32 1.01 6.12 -1.48 -- 2.17 -- 10.1 -1.77 -- 5.084 3786 19.8 7.13
498.82 1.05 6.08 -1.52 0.898 -- 0.555 -- -1.87 9.03 -- -- -- --
499.89 1.05 6.08 -1.5 0.897 -- -- -- -1.87 9.03 -- -- -- --
512.76 1.05 6 -1.25 -- 1.37 -- -- -1.72 -- 7.999 10767 20 7.63
482.83 1.02 5.97 -- 0.925 1.42 -- -- -1.39 8.87 8.392 46352 19.3 7.82
546.1 1.09 6.1 -1.5 -- -- -- -- -1.86 -- -- -- -- --
558.92 1.11 6.04 -- 0.895 -- -- -- -1.7 9.15 -- -- -- --
524.76 1.07 5.98 -- -- 1.61 -- -- -1.32 -- 8.2 47520 18.2 6.97
605.3 1.15 6.07 -- -- -- -- -- -1.69 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 424.19 atmosphere 1005.0 14400 < th dose independent rect. 23 1
2 425.10 atmosphere 1005.0 14400 > th dose independent rect. 23 1
3 425.87 precipitation 0.1 14400 > th dose dependent rect. 17 1
6 429.47 precipitation 0.1 14400 > th dose independent rect. 17 1
7 429.53 wind 5.0 4320 > th dose dependent rect. 20 7
10 429.56 precipitation 0.1 14400 > th dose dependent rect. 20 3
16 430.63 precipitation 0.1 14400 < th dose independent rect. 17 1
17 430.63 precipitation 0.1 14400 < th dose dependent rect. 17 1
18 430.93 atmosphere 1005.0 14400 < th dose independent rect. 3 1
21 431.26 precipitation 0.1 14400 > th dose dependent rect. 21 1
27 431.93 atmosphere 1005.0 14400 > th dose independent rect. 23 5
45 432.85 atmosphere 1005.0 14400 > th dose independent rect. 3 1
93 435.51 precipitation 0.1 14400 < th dose independent rect. 21 1
94 435.51 precipitation 0.1 14400 < th dose dependent rect. 21 1
98 435.59 precipitation 0.1 14400 > th dose independent rect. 21 1
109 436.02 precipitation 0.1 14400 < th dose independent rect. 20 3
110 436.02 precipitation 0.1 14400 < th dose dependent rect. 20 3
111 436.05 precipitation 0.1 14400 > th dose independent rect. 20 3
145 437.83 wind 5.0 4320 < th dose independent rect. 20 1
158 438.36 wind 7.0 4320 < th dose independent rect. 20 7
161 438.48 wind 5.0 4320 > th dose independent rect. 20 1
166 438.71 wind 7.0 4320 > th dose independent rect. 20 7
209 440.98 atmosphere 1005.0 4320 < th dose dependent rect. 24 1
222 441.56 temperature 25.0 10 < th dose dependent rect. 24 23
229 441.95 temperature 25.0 90 < th dose dependent rect. 24 23
232 442.02 atmosphere 1005.0 14400 < th dose independent sin 9 NA
243 442.37 atmosphere 1005.0 14400 > th dose independent sin 9 NA
255 442.61 wind 1.0 43200 > th dose independent rect. 4 3
329 444.19 temperature 25.0 720 < th dose dependent rect. 15 13
333 444.23 atmosphere 1000.0 4320 < th dose dependent rect. 7 1
340 444.35 atmosphere 1000.0 4320 < th dose dependent rect. 4 1
345 444.39 temperature 25.0 720 < th dose dependent rect. 11 17
362 444.63 atmosphere 995.0 14400 > th dose independent rect. 7 8
367 444.67 atmosphere 1000.0 4320 < th dose dependent rect. 4 4
375 444.80 wind 3.0 4320 > th dose dependent rect. 20 1
386 444.91 atmosphere 995.0 14400 > th dose independent rect. 6 12
398 445.02 atmosphere 995.0 14400 > th dose independent rect. 6 14
399 445.04 temperature 25.0 720 < th dose dependent sin 16 NA
413 445.18 temperature 25.0 1440 < th dose dependent rect. 17 1
414 445.19 atmosphere 1000.0 4320 > th dose independent rect. 7 1
420 445.21 atmosphere 1000.0 4320 < th dose independent rect. 7 1
425 445.22 atmosphere 995.0 14400 > th dose independent rect. 13 2
432 445.28 atmosphere 995.0 14400 > th dose independent rect. 11 4
436 445.28 atmosphere 1000.0 4320 < th dose dependent rect. 22 14
472 445.45 atmosphere 995.0 14400 < th dose dependent rect. 14 3
492 445.47 atmosphere 995.0 14400 > th dose independent rect. 15 1
550 445.56 temperature 25.0 1440 < th dose dependent rect. 16 6
554 445.58 atmosphere 995.0 14400 < th dose independent rect. 15 1
565 445.59 temperature 20.0 270 > th dose independent rect. 19 12
633 445.70 atmosphere 1000.0 4320 < th dose dependent sin 7 NA
851 446.32 atmosphere 1000.0 4320 > th dose independent rect. 9 1