BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0406600 Os05g0406600|J065120D11
(125 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0406600 Conserved hypothetical protein 231 1e-61
Os06g0212200 175 6e-45
Os04g0169500 Protein of unknown function DUF668 family protein 78 2e-15
>Os05g0406600 Conserved hypothetical protein
Length = 125
Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/125 (95%), Positives = 119/125 (95%)
Query: 1 RQGRRGXXXXXXEGVDDGKVDILSFDVANAMSRAANLYPLAVGHRGGAAAHLLCLGSQAV 60
RQGRRG EGVDDGKVDILSFDVANAMSRAANLYPLAVGHRGGAAAHLLCLGSQAV
Sbjct: 1 RQGRRGAAAAAAEGVDDGKVDILSFDVANAMSRAANLYPLAVGHRGGAAAHLLCLGSQAV 60
Query: 61 RALVPGDDSWLLALTLAEKLDALNRVAEVATRLGRRCMLQALLGFDHVYADLLAGCSDAV 120
RALVPGDDSWLLALTLAEKLDALNRVAEVATRLGRRCMLQALLGFDHVYADLLAGCSDAV
Sbjct: 61 RALVPGDDSWLLALTLAEKLDALNRVAEVATRLGRRCMLQALLGFDHVYADLLAGCSDAV 120
Query: 121 AISSR 125
AISSR
Sbjct: 121 AISSR 125
>Os06g0212200
Length = 136
Score = 175 bits (444), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/105 (84%), Positives = 91/105 (86%)
Query: 2 QGRRGXXXXXXEGVDDGKVDILSFDVANAMSRAANLYPLAVGHRGGAAAHLLCLGSQAVR 61
G+ G EGVDDGKVDILSF+VANAMSRAANLYPLAVG RGGAAA CLGSQAVR
Sbjct: 15 SGKGGAAAAAAEGVDDGKVDILSFEVANAMSRAANLYPLAVGRRGGAAARPRCLGSQAVR 74
Query: 62 ALVPGDDSWLLALTLAEKLDALNRVAEVATRLGRRCMLQALLGFD 106
ALVPGDDSWLLALTLAEKLD LNRVA VATRLGRRCMLQALLGFD
Sbjct: 75 ALVPGDDSWLLALTLAEKLDTLNRVAAVATRLGRRCMLQALLGFD 119
>Os04g0169500 Protein of unknown function DUF668 family protein
Length = 514
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 59/67 (88%)
Query: 53 LCLGSQAVRALVPGDDSWLLALTLAEKLDALNRVAEVATRLGRRCMLQALLGFDHVYADL 112
LCLGSQAVRALVPGDD+ LLAL LAEKLDAL RVA VA RLGRRC L ALLGFDHVYADL
Sbjct: 38 LCLGSQAVRALVPGDDARLLALALAEKLDALIRVAAVAARLGRRCTLPALLGFDHVYADL 97
Query: 113 LAGCSDA 119
LAG SDA
Sbjct: 98 LAGRSDA 104
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,843,729
Number of extensions: 130168
Number of successful extensions: 334
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 3
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)