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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0406600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.0246) R2 : 0.00389
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0689 (0.0517) R2dN8 : 0.00502 R2N8 : 0.00389
σ : 0.462
deviance : 98.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.21 0.396 3.57 -0.814 0.536 1.02 -0.877 -1.96 -0.233 4.27 18 549 -- --
73.81 0.4 3.52 -0.435 0.508 1.08 -0.575 -- -0.122 4.06 12.67 565 -- --
73.02 0.398 3.56 -0.746 0.456 0.99 -- -1.58 -0.208 4.3 17.58 656 -- --
74.77 0.403 3.53 -0.432 0.51 1.1 -- -- -0.123 4.09 12.86 560 -- --
76.58 0.408 3.58 -0.781 -- 0.947 -- -1.51 -0.232 -- 17.5 1093 -- --
88.01 0.44 3.5 -0.188 0.375 -- -0.544 -- 0.0394 2.15 -- -- -- --
89.07 0.442 3.49 -0.172 0.373 -- -- -- 0.043 1.84 -- -- -- --
79.83 0.416 3.53 -0.46 -- 1.03 -- -- -0.126 -- 10.43 1083 -- --
79.12 0.414 3.51 -- 0.49 0.912 -- -- -0.0548 3.72 12.08 517 -- --
97.48 0.461 3.49 -0.157 -- -- -- -- 0.0515 -- -- -- -- --
89.85 0.443 3.49 -- 0.37 -- -- -- 0.0622 1.83 -- -- -- --
84.69 0.429 3.51 -- -- 0.794 -- -- -0.0486 -- 16 1065 -- --
98.13 0.462 3.49 -- -- -- -- -- 0.0689 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.82 temperature 20 720 > th dose dependent rect. 12 19
5 70.12 temperature 20 720 > th dose dependent rect. 15 17
11 70.21 humidity 90 14400 > th dose dependent rect. 21 5
50 70.74 temperature 20 720 > th dose dependent sin 14 NA
52 70.74 temperature 10 720 > th dose dependent rect. 12 16
53 70.75 humidity 90 43200 < th dose independent rect. 22 1
79 70.92 humidity 90 43200 < th dose independent rect. 4 21
96 70.97 humidity 90 43200 > th dose independent rect. 22 1
97 70.97 humidity 90 43200 < th dose independent rect. 19 4
108 71.01 humidity 90 14400 > th dose dependent sin 13 NA
137 71.09 humidity 90 43200 > th dose independent rect. 4 21
140 71.11 humidity 90 43200 < th dose independent rect. 8 17
149 71.13 humidity 90 43200 < th dose independent rect. 14 9
157 71.15 humidity 90 43200 < th dose independent rect. 13 11
203 71.24 humidity 90 43200 < th dose independent sin 19 NA
209 71.25 humidity 90 43200 > th dose independent rect. 4 6
229 71.28 humidity 90 43200 > th dose independent sin 3 NA
241 71.30 humidity 90 43200 > th dose independent rect. 3 13
247 71.30 humidity 80 43200 > th dose dependent rect. 4 18
268 71.33 temperature 20 720 > th dose dependent rect. 6 22
278 71.35 humidity 90 43200 > th dose independent rect. 8 17
294 71.37 humidity 80 43200 > th dose dependent rect. 8 16
312 71.39 temperature 20 720 > th dose dependent rect. 15 23
316 71.40 humidity 90 14400 > th dose independent rect. 18 11
328 71.41 humidity 80 43200 > th dose dependent rect. 9 14
336 71.42 humidity 80 43200 > th dose dependent rect. 17 2
341 71.43 humidity 90 43200 > th dose independent rect. 3 9
357 71.45 humidity 80 43200 > th dose dependent rect. 17 5
359 71.46 humidity 90 43200 < th dose independent sin 3 NA
362 71.46 humidity 80 43200 > th dose dependent sin 20 NA
384 71.48 humidity 80 43200 > th dose dependent sin 1 NA
412 71.51 temperature 20 720 > th dose dependent no NA NA
431 71.53 humidity 90 43200 > th dose dependent rect. 4 12
442 71.54 temperature 25 4320 < th dose independent rect. 24 18
453 71.55 temperature 20 720 > th dose dependent rect. 1 23
485 71.59 humidity 90 43200 > th dose independent sin 19 NA
513 71.62 humidity 90 43200 > th dose independent rect. 15 8
541 71.65 humidity 90 43200 < th dose independent rect. 4 7
569 71.67 humidity 90 43200 > th dose independent rect. 9 1
583 71.68 temperature 25 4320 > th dose independent rect. 24 17
607 71.70 humidity 90 43200 < th dose independent rect. 15 23
610 71.71 humidity 80 43200 > th dose independent rect. 12 8
614 71.71 humidity 90 43200 > th dose independent rect. 15 23
615 71.71 humidity 90 43200 > th dose independent rect. 19 23
621 71.72 humidity 90 43200 > th dose independent no NA NA
623 71.72 humidity 90 43200 < th dose independent no NA NA
625 71.72 humidity 80 43200 > th dose independent rect. 10 10
646 71.73 humidity 90 43200 > th dose dependent rect. 4 7
662 71.74 temperature 20 1440 > th dose dependent rect. 18 4
663 71.74 humidity 90 43200 > th dose dependent rect. 5 4
675 71.75 humidity 90 43200 < th dose independent rect. 3 13
680 71.75 humidity 90 43200 > th dose independent rect. 17 23
695 71.76 humidity 90 43200 > th dose independent rect. 22 23
696 71.76 humidity 90 43200 < th dose independent rect. 22 23
703 71.77 humidity 90 14400 < th dose independent rect. 18 9
710 71.77 humidity 90 43200 > th dose dependent rect. 5 2
714 71.78 humidity 90 43200 < th dose independent rect. 9 1
722 71.78 humidity 90 43200 < th dose independent rect. 17 23
741 71.79 humidity 90 43200 < th dose independent rect. 19 23
749 71.79 temperature 20 720 > th dose dependent rect. 23 23
800 71.83 humidity 90 43200 > th dose independent rect. 11 23
820 71.84 humidity 90 43200 > th dose independent rect. 8 23
831 71.84 temperature 20 720 > th dose dependent rect. 19 23
843 71.85 humidity 70 43200 > th dose dependent rect. 13 1
851 71.86 humidity 90 43200 < th dose independent rect. 11 23
864 71.87 radiation 1 4320 < th dose dependent rect. 23 10
866 71.87 radiation 1 4320 < th dose dependent rect. 21 12
885 71.88 temperature 20 720 > th dose dependent rect. 21 23
939 71.91 radiation 1 4320 < th dose dependent rect. 4 5
943 71.91 temperature 30 270 < th dose dependent rect. 15 11
953 71.92 temperature 20 1440 > th dose dependent rect. 20 1
961 71.92 radiation 1 4320 < th dose dependent rect. 18 17
991 71.94 humidity 90 43200 < th dose independent rect. 8 23