BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0406600 Os05g0406600|J065120D11
         (125 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23160.1  | chr3:8260059-8261654 REVERSE LENGTH=532             79   7e-16

>AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532
          Length = 531

 Score = 78.6 bits (192), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 11/104 (10%)

Query: 20  VDILSFDVANAMSRAANLYPLAVGHRGGAAAHLLCLG-----SQAVRALVPGDDSWLLAL 74
           + ILSF+VAN MS+  +L      HR  +   +  L      S+ VR LV  D++ LL L
Sbjct: 43  IGILSFEVANVMSKTIHL------HRSLSDTEISKLKAEVFHSEGVRKLVSSDENHLLDL 96

Query: 75  TLAEKLDALNRVAEVATRLGRRCMLQALLGFDHVYADLLAGCSD 118
           +++EKLD L+RVA V +RLG++C   AL GF+HVY D++ G  D
Sbjct: 97  SVSEKLDDLSRVASVVSRLGKKCNEPALQGFEHVYEDIVNGAID 140



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,187,555
Number of extensions: 66425
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)