BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0405900 Os05g0405900|AK072244
(1006 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0405900 WD40-like domain containing protein 1793 0.0
Os01g0786900 WD40-like domain containing protein 430 e-120
>Os05g0405900 WD40-like domain containing protein
Length = 1006
Score = 1793 bits (4645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1006 (87%), Positives = 883/1006 (87%)
Query: 1 MRRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVL 60
MRRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVL
Sbjct: 1 MRRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVL 60
Query: 61 WAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPVYS 120
WAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPVYS
Sbjct: 61 WAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPVYS 120
Query: 121 DGTEGFRTSHPMLLVVAGDETNGSGMVQGGRLSALIRDNSSETPNGNCISTPTVVRFYSL 180
DGTEGFRTSHPMLLVVAGDETNGSGMVQGGRLSALIRDNSSETPNGNCISTPTVVRFYSL
Sbjct: 121 DGTEGFRTSHPMLLVVAGDETNGSGMVQGGRLSALIRDNSSETPNGNCISTPTVVRFYSL 180
Query: 181 KSHSYVHVLRFRSAVYIVRCSPRIVAVALAAQVYCFDAVTLENKFSVLTYPLQGAPGINI 240
KSHSYVHVLRFRSAVYIVRCSPRIVAVALAAQVYCFDAVTLENKFSVLTYPLQGAPGINI
Sbjct: 181 KSHSYVHVLRFRSAVYIVRCSPRIVAVALAAQVYCFDAVTLENKFSVLTYPLQGAPGINI 240
Query: 241 GYGPMAVGPRWLAYASNSPLLSSTGRLSPQNXXXXXXXXXXXXXXXXXXXARYAMESSKQ 300
GYGPMAVGPRWLAYASNSPLLSSTGRLSPQN ARYAMESSKQ
Sbjct: 241 GYGPMAVGPRWLAYASNSPLLSSTGRLSPQNLTPSPGVSPSTSPSSGSLVARYAMESSKQ 300
Query: 301 IAAGIINLGDMGYKTLSKYCQEFXXXXXXXXXXXXXXXXXXXXXXXVHPLEADNAGMVVI 360
IAAGIINLGDMGYKTLSKYCQEF VHPLEADNAGMVVI
Sbjct: 301 IAAGIINLGDMGYKTLSKYCQEFLPDGSGSPLSSSPGRRSGKLPSSVHPLEADNAGMVVI 360
Query: 361 KDFISKEIISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANSSGSIRY 420
KDFISKEIISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANSSGSIRY
Sbjct: 361 KDFISKEIISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANSSGSIRY 420
Query: 421 DWTASHVHLYKLYRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFGGDASLLPQN 480
DWTASHVHLYKLYRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFGGDASLLPQN
Sbjct: 421 DWTASHVHLYKLYRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFGGDASLLPQN 480
Query: 481 SHSDGLPLAPCQSRPWWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWLNTVSNVAAS 540
SHSDGLPLAPCQSRPWWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWLNTVSNVAAS
Sbjct: 481 SHSDGLPLAPCQSRPWWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWLNTVSNVAAS 540
Query: 541 ASGKLSVPSGAVTAVFHNSNYEGSLPVPSKANAMEHLLVYSPSGHVIQHELLPXXXXXXX 600
ASGKLSVPSGAVTAVFHNSNYEGSLPVPSKANAMEHLLVYSPSGHVIQHELLP
Sbjct: 541 ASGKLSVPSGAVTAVFHNSNYEGSLPVPSKANAMEHLLVYSPSGHVIQHELLPSGSESSD 600
Query: 601 XXPIVGPGSLQIQDDELHVTAEPTQWWDVCRRTNWPERDENIANIVFHNQRNSMMAMDAS 660
PIVGPGSLQIQDDELHVTAEPTQWWDVCRRTNWPERDENIANIVFHNQRNSMMAMDAS
Sbjct: 601 SSPIVGPGSLQIQDDELHVTAEPTQWWDVCRRTNWPERDENIANIVFHNQRNSMMAMDAS 660
Query: 661 DCDSEHSDSVPSDGISGKEMMRSRERSSWYLSNAEVQISSWRIPIWQKSKIFFYVIDQPP 720
DCDSEHSDSVPSDGISGKEMMRSRERSSWYLSNAEVQISSWRIPIWQKSKIFFYVIDQPP
Sbjct: 661 DCDSEHSDSVPSDGISGKEMMRSRERSSWYLSNAEVQISSWRIPIWQKSKIFFYVIDQPP 720
Query: 721 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKQFHYSEQNFSDRFRNLAIGRFQNA 780
A FKQFHYSEQNFSDRFRNLAIGRFQNA
Sbjct: 721 AKSGESLSSSGGEIEIEKLPLHEVELRRRELLPVFKQFHYSEQNFSDRFRNLAIGRFQNA 780
Query: 781 LTYIDKDNGAHGSKAGFPISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSP 840
LTYIDKDNGAHGSKAGFPISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSP
Sbjct: 781 LTYIDKDNGAHGSKAGFPISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSP 840
Query: 841 KVANFTALHNVDNESMNHXXXXXXXXXXXXXXXXXXXXIRXXXXXXXXXXXXXXXXXXXA 900
KVANFTALHNVDNESMNH IR A
Sbjct: 841 KVANFTALHNVDNESMNHVSTATGATTSVTTVDTLPSTIRPLSSYSLLDGSLDDGLPSPA 900
Query: 901 SNVSFRPQITNNSSVSNGTMTDISNGCLTSINSGQNEASDSHNSVEFTQYFQEGYCKISE 960
SNVSFRPQITNNSSVSNGTMTDISNGCLTSINSGQNEASDSHNSVEFTQYFQEGYCKISE
Sbjct: 901 SNVSFRPQITNNSSVSNGTMTDISNGCLTSINSGQNEASDSHNSVEFTQYFQEGYCKISE 960
Query: 961 LDDCRELTEAVTDADSSSSHCEREKPEEDGDNDDMLGAVFAFSEEG 1006
LDDCRELTEAVTDADSSSSHCEREKPEEDGDNDDMLGAVFAFSEEG
Sbjct: 961 LDDCRELTEAVTDADSSSSHCEREKPEEDGDNDDMLGAVFAFSEEG 1006
>Os01g0786900 WD40-like domain containing protein
Length = 870
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 285/729 (39%), Positives = 394/729 (54%), Gaps = 57/729 (7%)
Query: 15 SLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAED-EKDQVLWAGFDKLELHPSS 73
S R +S ++ +SS A + AS++ S GAS+ SIA ED +DQV WAGFDKLE
Sbjct: 18 SKRTLSGYMRIMSSGASTAASSLLSVGASLVNSIASHDEDGSRDQVQWAGFDKLECGGDM 77
Query: 74 FKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPVYSDGTEGFRTSHPML 133
+ VLL+ Y +GFQV DVE A +V +L S+ DG V+F+Q+ P+ S +E L
Sbjct: 78 LRQVLLLAYRSGFQVWDVEHANDVRQLESRHDGTVSFMQLLKKPIASTNSEDKFADERPL 137
Query: 134 LVVAGDETNGSGMVQGGRLSALIRDNSSETPNGNCIST--------PTVVRFYSLKSHSY 185
L +A D T+ ++ D + PNG + PTV+RFYSL+ H Y
Sbjct: 138 LALACDGTSTGSLIS--------NDGNGPVPNGANGTLHNIGHENHPTVLRFYSLRVHDY 189
Query: 186 VHVLRFRSAVYIVRCSPRIVAVALAAQVYCFDAVTLENKFSVLTYPLQGAPGINIGYGPM 245
VH ++FRS VY +RCS R+VAV+ A Q++CFDA TLE ++++LT + P I+ YGP+
Sbjct: 190 VHTIKFRSTVYSIRCSSRVVAVSQANQIHCFDAATLEREYTILTSHI--VPPIS-SYGPL 246
Query: 246 AVGPRWLAYASNSPLLSSTGRLSPQNXXXXXXXXXXXXXXXXXXXARYAMESSKQIAAGI 305
A+GPRW+AY+ N + TGR++PQ A YA ESSKQ+A+GI
Sbjct: 247 ALGPRWIAYSGNPVPVPDTGRVTPQ--LLNLSPLVPQPGSNGSVVAYYAKESSKQLASGI 304
Query: 306 INLGDMGYKTLSKYCQEFXXXXXXXXXXXXXXXXXXXXXXXVHPLEADNAGMVVIKDFIS 365
I LGD+GYK LSKYC + H +++ AGMV+++D +S
Sbjct: 305 ITLGDVGYKKLSKYCSDLIPSSNNVINQRNSGFKANGATINGH-TDSEYAGMVIVRDIVS 363
Query: 366 KEIISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANSSGSIRYDWTAS 425
K ++ QFRAHTSPISALCFDPSGTLLVTAS+HG NINVFRI+P+ +SS +
Sbjct: 364 KSMVVQFRAHTSPISALCFDPSGTLLVTASIHGRNINVFRILPSSHGSSS---EAGPNGT 420
Query: 426 HVHLYKLYRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFGGDASL------LPQ 479
VHLYKL RG+T AVI+DISFS S+WI I SSRGT H F +SP+ G S L +
Sbjct: 421 CVHLYKLQRGITNAVIKDISFSDDSEWIMISSSRGTSHFFAISPYCGSTSFHYNENNLAE 480
Query: 480 NSHSDGLPLAPCQSRPWWSKPSFLMDHQ-LHPAPSTVTNSVVSRIKNSSSGWLNTVSNVA 538
NS++ + S PS ++ + L VT SVVSRI+N + V A
Sbjct: 481 NSYAVDSSVNHTAHWSQNSAPSLSLNQKILSVTGPPVTLSVVSRIRNGGNLLKGAVHGAA 540
Query: 539 ASASGKLSVPSGAVTAVFHN-----SNYEGSLPVPSKANAMEHLLVYSPSGHVIQH---- 589
A A+G S SGA+ + FHN N +GS P HLLV+SPSG +IQ+
Sbjct: 541 AFATGVSSPISGAIASTFHNCKGAVKNSDGSSPC-----MKYHLLVFSPSGSIIQYVLHR 595
Query: 590 --ELLPXXXXXXXXXPIVGPGSLQIQDDELHVTAEPTQWWDVCRRTNWPERDENIANIVF 647
E P P GS + D + E Q WDVC + N + E+ F
Sbjct: 596 SAEQDPGIDFPSSAIPY---GSQRETDTRFII--EALQKWDVCHKRNRRDAAESFVYSDF 650
Query: 648 HNQRNSMMAMDASDCDSEHSDSVPSDGISGKEMMRSRERSSWYLSNAEVQISSWRIPIWQ 707
NS + + + + PS+G + ++ E ++Y+S +E+Q P+W
Sbjct: 651 DIGENSKLFQKVA---KKGTSVYPSNGTAVEKQKLGDENHNFYISESELQTHVVPTPLWS 707
Query: 708 KSKIFFYVI 716
+S + F V+
Sbjct: 708 RSGMHFQVM 716
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,882,074
Number of extensions: 1237000
Number of successful extensions: 3500
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3488
Number of HSP's successfully gapped: 2
Length of query: 1006
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 895
Effective length of database: 11,240,047
Effective search space: 10059842065
Effective search space used: 10059842065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)