Os01g0786900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0786900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.27 | 0.263 | 12.3 | -0.222 | 1.73 | -0.444 | -0.201 | -0.565 | -0.155 | 6.99 | 23.63 | 9 | -- | -- |
| 31.68 | 0.262 | 12.3 | -0.296 | 1.74 | -0.385 | -0.154 | -- | -0.188 | 6.96 | 25.16 | 4 | -- | -- |
| 31.38 | 0.261 | 12.3 | -0.227 | 1.73 | -0.445 | -- | -0.559 | -0.156 | 6.99 | 23.6 | 8 | -- | -- |
| 31.75 | 0.262 | 12.3 | -0.296 | 1.74 | -0.375 | -- | -- | -0.185 | 6.98 | 25.1 | 4 | -- | -- |
| 188.93 | 0.644 | 12.4 | -0.206 | -- | -0.559 | -- | -0.624 | -0.135 | -- | 23.4 | 4 | -- | -- |
| 33.72 | 0.272 | 12.3 | -0.206 | 1.74 | -- | -0.19 | -- | -0.111 | 7.15 | -- | -- | -- | -- |
| 33.82 | 0.272 | 12.3 | -0.21 | 1.74 | -- | -- | -- | -0.111 | 7.15 | -- | -- | -- | -- |
| 189.56 | 0.644 | 12.4 | -0.278 | -- | -0.489 | -- | -- | -0.148 | -- | 23.4 | 4 | -- | -- |
| 33.87 | 0.271 | 12.3 | -- | 1.75 | -0.269 | -- | -- | -0.131 | 7.03 | 25.1 | 4 | -- | -- |
| 193.05 | 0.649 | 12.3 | -0.177 | -- | -- | -- | -- | -0.0803 | -- | -- | -- | -- | -- |
| 34.98 | 0.277 | 12.3 | -- | 1.73 | -- | -- | -- | -0.0876 | 7.15 | -- | -- | -- | -- |
| 191.45 | 0.647 | 12.4 | -- | -- | -0.393 | -- | -- | -0.106 | -- | 23.4 | 2 | -- | -- |
| 193.88 | 0.65 | 12.3 | -- | -- | -- | -- | -- | -0.0606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.90 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 3 | 29.93 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 12 | 29.98 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 13 | 29.98 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 22 | 29.99 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 11 | NA |
| 24 | 29.99 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 25 | 29.99 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 26 | 29.99 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 32 | 29.99 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 60 | 30.01 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 10 | NA |
| 207 | 30.10 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 210 | 30.10 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 214 | 30.10 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 363 | 30.17 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 387 | 30.17 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 407 | 30.18 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 413 | 30.19 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 414 | 30.19 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 469 | 30.21 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 489 | 30.21 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 490 | 30.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 513 | 30.22 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 617 | 30.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 622 | 30.27 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 715 | 30.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 854 | 30.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 866 | 30.44 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 912 | 30.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 13 |
| 931 | 30.49 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 20 |
| 963 | 30.53 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 968 | 30.53 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 971 | 30.54 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 973 | 30.54 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 995 | 30.55 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 22 | 6 |