BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0404700 Os05g0404700|Os05g0404700
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0404700  Zinc finger, CW-type domain containing protein      361   e-100
Os05g0404600  Zinc finger, CW-type domain containing protein      205   1e-53
Os09g0494300  Similar to Methyl-CpG-binding domain protein 1...   117   3e-27
Os06g0702100  Zinc finger, CW-type domain containing protein      107   4e-24

>Os05g0404700 Zinc finger, CW-type domain containing protein
          Length = 175

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MALEGKPGFITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDI 60
           MALEGKPGFITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDI
Sbjct: 1   MALEGKPGFITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDI 60

Query: 61  QYDTSRIWAIDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKEN 120
           QYDTSRIWAIDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKEN
Sbjct: 61  QYDTSRIWAIDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKEN 120

Query: 121 PEYAATLPLSSFNFSTPKIVKETVSDSAKWVMAKSEREEQCMQLDAKEVPSSSSK 175
           PEYAATLPLSSFNFSTPKIVKETVSDSAKWVMAKSEREEQCMQLDAKEVPSSSSK
Sbjct: 121 PEYAATLPLSSFNFSTPKIVKETVSDSAKWVMAKSEREEQCMQLDAKEVPSSSSK 175



>Os05g0404600 Zinc finger, CW-type domain containing protein
          Length = 168

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 120/155 (77%)

Query: 10  ITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDIQYDTSRIWA 69
           I MYA+ CC+C KWR +PTK+EFE IREN+  +PW CS++ DCSCE P DI+YD+SRIW 
Sbjct: 10  IGMYAVQCCECHKWRKVPTKDEFETIRENFTEEPWHCSRRPDCSCEDPADIEYDSSRIWV 69

Query: 70  IDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKENPEYAATLPL 129
           +D+PNIPKPP  TERL+IMR DLSKMD YYV+PNGKR +   ++D+FL+ NP+Y     +
Sbjct: 70  LDKPNIPKPPAGTERLVIMRGDLSKMDTYYVMPNGKRVRCTAEVDKFLEANPQYKDRFSV 129

Query: 130 SSFNFSTPKIVKETVSDSAKWVMAKSEREEQCMQL 164
            SF+F+TPKIV+ETVS ++ W   K++++++   L
Sbjct: 130 ESFSFTTPKIVEETVSHNSVWKSGKAKKQDKINAL 164



>Os09g0494300 Similar to Methyl-CpG-binding domain protein 1 (Methyl-CpG binding
           protein MBD1)
          Length = 315

 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 85/140 (60%), Gaps = 7/140 (5%)

Query: 10  ITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKR----DCSCEHPEDIQYDTS 65
           I  + + C KC KWR IPTKE++E IRE    +P+ C + R    D +C  PEDI  D S
Sbjct: 76  IGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRPDVTCNDPEDISQDGS 135

Query: 66  RIWAIDRPNIPKPPPKTERLLIMRNDLSK--MDAYYVLPNGKRAKGKPDIDRFLKENPEY 123
           R+WAID+PNI  PPP  ER + +R +      D YY  P G++ +   +IDR+L ENP+Y
Sbjct: 136 RLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEIDRYLLENPDY 195

Query: 124 AA-TLPLSSFNFSTPKIVKE 142
            A  + L+ F+F  P+ +++
Sbjct: 196 VAQGVTLTQFSFQIPRPLRQ 215



>Os06g0702100 Zinc finger, CW-type domain containing protein
          Length = 373

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 7/140 (5%)

Query: 10  ITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRD----CSCEHPEDIQYDTS 65
           I  Y + C  C KWR IPTKE++E IREN     + C + R+     SC  PEDI  D S
Sbjct: 120 IGAYTVQCAHCFKWRIIPTKEKYEEIRENICQDVFVCERAREWNRVISCVDPEDISQDGS 179

Query: 66  RIWAIDRPNIPKPPPKTERLLIMRND-LSKM-DAYYVLPNGKRAKGKPDIDRFLKENPEY 123
           R+WAID+ +I + PP  +R + +R +  SK  D YY  P GK+ +   ++ R+L ENP Y
Sbjct: 180 RVWAIDKASISQTPPGWDREVRIRGEGCSKFADVYYTSPTGKKLRSLVEVGRYLAENPHY 239

Query: 124 A-ATLPLSSFNFSTPKIVKE 142
               + L+ F+F+TPK ++E
Sbjct: 240 IRQGVNLTQFSFATPKPLQE 259



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,814,763
Number of extensions: 294497
Number of successful extensions: 740
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)