BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0392700 Os05g0392700|AK104407
         (330 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0392700  Mitochondrial substrate carrier family protein      563   e-161
Os03g0734700  Mitochondrial substrate carrier family protein       72   5e-13

>Os05g0392700 Mitochondrial substrate carrier family protein
          Length = 330

 Score =  563 bits (1451), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/330 (85%), Positives = 283/330 (85%)

Query: 1   MAGDGVDWESVAEATSGAVGALVSTTVLYPLDTCKTKFQAELQTQPGAHKYRNLSDVFWE 60
           MAGDGVDWESVAEATSGAVGALVSTTVLYPLDTCKTKFQAELQTQPGAHKYRNLSDVFWE
Sbjct: 1   MAGDGVDWESVAEATSGAVGALVSTTVLYPLDTCKTKFQAELQTQPGAHKYRNLSDVFWE 60

Query: 61  AVQKRQILSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSIGTKANLLXXXXX 120
           AVQKRQILSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSIGTKANLL     
Sbjct: 61  AVQKRQILSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSIGTKANLLVAAAA 120

Query: 121 XXXXXXXXQPLDTASSRMQTSAFGKSKGLRATLAEGTWLEAFDGLGISLILTCNPSIQYT 180
                   QPLDTASSRMQTSAFGKSKGLRATLAEGTWLEAFDGLGISLILTCNPSIQYT
Sbjct: 121 GACTVVVTQPLDTASSRMQTSAFGKSKGLRATLAEGTWLEAFDGLGISLILTCNPSIQYT 180

Query: 181 VFDXXXXXXXXXXXXXNAEAGGGSSPVXXXXXXXXXXGAISKSVATILTYPLIRCKVMIQ 240
           VFD             NAEAGGGSSPV          GAISKSVATILTYPLIRCKVMIQ
Sbjct: 181 VFDQLKQKLIQRQRRKNAEAGGGSSPVALSAFSAFLLGAISKSVATILTYPLIRCKVMIQ 240

Query: 241 AAXXXXXXXXXXXRPGKSKSPKTMLGALHAMWSKEGIPGFFKGLHAQILKTVLSSALLLM 300
           AA           RPGKSKSPKTMLGALHAMWSKEGIPGFFKGLHAQILKTVLSSALLLM
Sbjct: 241 AADPDEDDDDESERPGKSKSPKTMLGALHAMWSKEGIPGFFKGLHAQILKTVLSSALLLM 300

Query: 301 IKEKISRFTWISLLALRRYLFVSQKRIKSA 330
           IKEKISRFTWISLLALRRYLFVSQKRIKSA
Sbjct: 301 IKEKISRFTWISLLALRRYLFVSQKRIKSA 330



>Os03g0734700 Mitochondrial substrate carrier family protein
          Length = 318

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 118/291 (40%), Gaps = 29/291 (9%)

Query: 28  LYPLDTCKTKFQAELQTQPGAHK---YRNLSDVFWEAVQKRQILSLYQGLKTKNIQSFIS 84
           L+PLD  +T+FQ  +    G +    YRN +   +   +   +  LY G     + S +S
Sbjct: 33  LHPLDVVRTRFQ--VSGGRGCYDLPPYRNTAHAVYTIARSEGLRGLYAGFYPAVLGSTVS 90

Query: 85  QFVYFYGYSYFKRLYLEKSGAKSIGTKANLLXXXXXXXXXXXXXQPLDTASSRMQ----- 139
             +YF+ Y+  K+ YL+    + +    +L+              P+    +R+Q     
Sbjct: 91  WGLYFFFYNRAKQRYLQGKDDQ-LRPVHHLVSAAEAGALVCLFTNPIWLVKTRLQLQTPS 149

Query: 140 --TSAF-GKSKGLRATLAEGTWLEAFDGLGISLILTCNPSIQYTVFDXXXXXXXXXXXXX 196
             TS + G S  LR  L E  WL  + G+G  L+L  + +IQ+T ++             
Sbjct: 150 HHTSRYSGFSDALRTILKEEGWLALYRGIGPGLLLVTHGAIQFTAYEELRKALIFAKSR- 208

Query: 197 NAEAGGGSSPVXXXXXXXXXXGAISKSVATILTYPLIRCKVMIQAAXXXXXXXXXXXRPG 256
                  S             GA SK  A +LTYP    +  +Q             RPG
Sbjct: 209 QTRTDNRSCDDSLNSIDYAALGAGSKVTAILLTYPYQVIRARLQ------------QRPG 256

Query: 257 KSKSPK--TMLGALHAMWSKEGIPGFFKGLHAQILKTVLSSALLLMIKEKI 305
              +PK       +      EG+ GF++G+ + +LK + +++L  ++ E +
Sbjct: 257 SDGTPKYKDSWHVVKETARHEGVRGFYRGITSNLLKNLPAASLTFVVYENV 307



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,295,553
Number of extensions: 244742
Number of successful extensions: 660
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)