Os05g0392700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial substrate carrier family protein.
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Os05g0392700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial substrate carrier family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.94 | 0.23 | 11.1 | -0.585 | 0.222 | 0.414 | 0.197 | -0.557 | 0.123 | 1.85 | 17.5 | 91 | -- | -- |
| 24.55 | 0.231 | 11.1 | -0.558 | 0.205 | 0.414 | -0.204 | -- | 0.115 | 1.12 | 16.69 | 96 | -- | -- |
| 23.97 | 0.228 | 11.1 | -0.572 | 0.221 | 0.41 | -- | -0.415 | 0.121 | 1.65 | 16.7 | 91 | -- | -- |
| 24.79 | 0.232 | 11.1 | -0.571 | 0.223 | 0.399 | -- | -- | 0.117 | 1.53 | 16.7 | 95 | -- | -- |
| 25.01 | 0.233 | 11.1 | -0.54 | -- | 0.546 | -- | -0.428 | 0.145 | -- | 14 | 105 | -- | -- |
| 29.49 | 0.255 | 11.1 | -0.611 | 0.547 | -- | -0.22 | -- | 0.0877 | 1.14 | -- | -- | -- | -- |
| 29.69 | 0.255 | 11.1 | -0.603 | 0.548 | -- | -- | -- | 0.0889 | 1.17 | -- | -- | -- | -- |
| 25.72 | 0.236 | 11.1 | -0.529 | -- | 0.542 | -- | -- | 0.134 | -- | 13.22 | 142 | -- | -- |
| 32.84 | 0.267 | 11.1 | -- | 0.0853 | 0.488 | -- | -- | 0.182 | 1.12 | 11.61 | 134 | -- | -- |
| 48.28 | 0.325 | 11.1 | -0.582 | -- | -- | -- | -- | 0.0999 | -- | -- | -- | -- | -- |
| 39.27 | 0.293 | 11.1 | -- | 0.538 | -- | -- | -- | 0.156 | 1.13 | -- | -- | -- | -- |
| 32.91 | 0.267 | 11.1 | -- | -- | 0.554 | -- | -- | 0.195 | -- | 11.6 | 146 | -- | -- |
| 57.22 | 0.353 | 11.1 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.31 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 3 | 22.49 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 4 | 22.51 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 5 | 22.51 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 16 | 22.70 | radiation | 20.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 21 | 22.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 24 | 22.74 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 26 | 22.77 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 38 | 22.88 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 69 | 23.03 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 123 | 23.22 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 126 | 23.23 | radiation | 10.0 | 90 | < th | dose independent | sin | 0 | NA |
| 157 | 23.32 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 188 | 23.42 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 218 | 23.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 220 | 23.50 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 259 | 23.58 | radiation | 10.0 | 90 | > th | dose independent | sin | 1 | NA |
| 304 | 23.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 318 | 23.67 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 333 | 23.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 342 | 23.71 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 345 | 23.71 | radiation | 20.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 348 | 23.72 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 352 | 23.73 | radiation | 10.0 | 30 | > th | dose independent | rect. | 8 | 9 |
| 390 | 23.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 395 | 23.78 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 434 | 23.82 | temperature | 20.0 | 30 | > th | dose independent | rect. | 17 | 15 |
| 435 | 23.82 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 444 | 23.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 445 | 23.83 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 446 | 23.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 447 | 23.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 448 | 23.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 454 | 23.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 458 | 23.83 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 466 | 23.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 17 |
| 471 | 23.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 485 | 23.86 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 487 | 23.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 16 |
| 492 | 23.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 495 | 23.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 8 |
| 496 | 23.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 498 | 23.87 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 19 |
| 502 | 23.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 517 | 23.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 518 | 23.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 521 | 23.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 530 | 23.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 533 | 23.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 534 | 23.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 545 | 23.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 546 | 23.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 552 | 23.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 565 | 23.93 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 575 | 23.95 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 594 | 23.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 605 | 23.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 607 | 23.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 608 | 23.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 610 | 23.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 611 | 23.98 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 615 | 23.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 622 | 23.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 625 | 23.99 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 626 | 23.99 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 17 |
| 657 | 24.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 679 | 24.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 689 | 24.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 713 | 24.06 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 727 | 24.07 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 728 | 24.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 729 | 24.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 731 | 24.07 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 745 | 24.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 753 | 24.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 754 | 24.09 | radiation | 10.0 | 10 | > th | dose independent | rect. | 8 | 7 |
| 756 | 24.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 762 | 24.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 782 | 24.11 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 19 |
| 793 | 24.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 800 | 24.12 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 824 | 24.14 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 838 | 24.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 844 | 24.14 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 848 | 24.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 862 | 24.15 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 11 |
| 867 | 24.15 | radiation | 10.0 | 90 | > th | dose independent | rect. | 16 | 23 |
| 872 | 24.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 933 | 24.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 948 | 24.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 951 | 24.21 | radiation | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 954 | 24.21 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 955 | 24.21 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 977 | 24.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 8 |