BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0392700 Os05g0392700|AK104407
(330 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05290.1 | chr3:1506129-1507614 REVERSE LENGTH=323 384 e-107
AT5G27520.1 | chr5:9714664-9716244 REVERSE LENGTH=322 367 e-102
AT2G39970.1 | chr2:16684026-16686392 REVERSE LENGTH=332 73 2e-13
AT5G66380.1 | chr5:26513645-26515533 REVERSE LENGTH=309 65 4e-11
>AT3G05290.1 | chr3:1506129-1507614 REVERSE LENGTH=323
Length = 322
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/324 (61%), Positives = 237/324 (73%), Gaps = 7/324 (2%)
Query: 5 GVDWESVAEATSGAVGALVSTTVLYPLDTCKTKFQAELQTQPGAHKYRNLSDVFWEAVQK 64
GVD ESV+EATSGA+G+L+STT+LYPLDTCK+KFQAE++ + G KYR LSDV WEA+ K
Sbjct: 2 GVDLESVSEATSGAIGSLLSTTILYPLDTCKSKFQAEVRAR-GQQKYRYLSDVMWEAISK 60
Query: 65 RQILSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSIGTKANLLXXXXXXXXX 124
Q+ SLYQGL TKN QSFISQF+YFY YSYFKR++ E++G+KSIGTKANLL
Sbjct: 61 GQVFSLYQGLGTKNFQSFISQFIYFYSYSYFKRVHSERTGSKSIGTKANLLIAAAAGACT 120
Query: 125 XXXXQPLDTASSRMQTSAFGKSKGLRATLAEGTWLEAFDGLGISLILTCNPSIQYTVFDX 184
QPLDTASSRMQTS FG+SKGL TL EG+W +AFDGLGISL+LT NP+IQYTVFD
Sbjct: 121 SVLIQPLDTASSRMQTSEFGESKGLWKTLTEGSWADAFDGLGISLLLTSNPAIQYTVFD- 179
Query: 185 XXXXXXXXXXXXNAEAGGGSSPVXXXXXXXXXXGAISKSVATILTYPLIRCKVMIQAAXX 244
NA+A GSSPV GA+SKSVAT+LTYP IRCKVMIQAA
Sbjct: 180 --QLKQHLLKQKNAKAENGSSPVVLSAFMAFVLGAVSKSVATVLTYPAIRCKVMIQAADE 237
Query: 245 XXXXXXXXXRPGKSKSPKTMLGALHAMWSKEGIPGFFKGLHAQILKTVLSSALLLMIKEK 304
R ++ KT+ G ++A+W KEG+ GFFKGL AQILKTVLSSALLLMIKEK
Sbjct: 238 SKENETKKPR---RRTRKTIPGVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIKEK 294
Query: 305 ISRFTWISLLALRRYLFVSQKRIK 328
I+ TWI +LA+RR LF++ + K
Sbjct: 295 ITATTWILILAIRRTLFLTNTKGK 318
>AT5G27520.1 | chr5:9714664-9716244 REVERSE LENGTH=322
Length = 321
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 233/327 (71%), Gaps = 8/327 (2%)
Query: 3 GDGVDWESVAEATSGAVGALVSTTVLYPLDTCKTKFQAELQTQPGAHKYRNLSDVFWEAV 62
G +D ES++EATSGA+G+L+STT+LYPLDTCK+KFQAE++ + G KYR LSDVFWEA+
Sbjct: 2 GVDLDLESISEATSGAIGSLLSTTILYPLDTCKSKFQAEIRVR-GQQKYRYLSDVFWEAI 60
Query: 63 QKRQILSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSIGTKANLLXXXXXXX 122
+LSLYQGL TKN+QSFIS F+YFY YSYFKRL+ ++ G+KSIGTKANLL
Sbjct: 61 SSGNVLSLYQGLGTKNLQSFISSFIYFYSYSYFKRLHSQRIGSKSIGTKANLLIAAAAGA 120
Query: 123 XXXXXXQPLDTASSRMQTSAFGKSKGLRATLAEGTWLEAFDGLGISLILTCNPSIQYTVF 182
QPLDTASSRMQTS FGKSKGL TL +G+W AFDGLGISL+LT NP+IQYTVF
Sbjct: 121 CTSVLTQPLDTASSRMQTSEFGKSKGLWKTLTDGSWGNAFDGLGISLLLTSNPAIQYTVF 180
Query: 183 DXXXXXXXXXXXXXNAEAGGGSSPVXXXXXXXXXXGAISKSVATILTYPLIRCKVMIQAA 242
D A++ SSPV GA+SKS AT++TYP IRCKVMIQAA
Sbjct: 181 D---QLKQNLLEKGKAKSNKDSSPVVLSAFMAFVLGAVSKSAATVITYPAIRCKVMIQAA 237
Query: 243 XXXXXXXXXXXRPGKSKSPKTMLGALHAMWSKEGIPGFFKGLHAQILKTVLSSALLLMIK 302
R + KT+ G ++A+W KEGI GFFKGL AQILKTVLSSALLLMIK
Sbjct: 238 DDSKENEAKKPR---KRIRKTIPGVVYAIWKKEGILGFFKGLQAQILKTVLSSALLLMIK 294
Query: 303 EKISRFTWISLLALRRYLFVSQKRIKS 329
EKI+ TWI +LA+R LFV++ R+KS
Sbjct: 295 EKITATTWILILAIRT-LFVTKARLKS 320
>AT2G39970.1 | chr2:16684026-16686392 REVERSE LENGTH=332
Length = 331
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 129/314 (41%), Gaps = 52/314 (16%)
Query: 29 YPLDTCKTKFQAELQTQPGAHKYRNLSDVFWEAVQKRQILSLYQGLKTKNIQSFISQFVY 88
YPL T T+ Q E + K + + + V++ LY GL + SQ VY
Sbjct: 23 YPLQTVNTRQQTERDLKREKRKLGTIEHM-CQVVKQEGWERLYGGLAPSLAGTAASQGVY 81
Query: 89 FYGYSYFKR------LYLEKSG--AKSIGTKANLLXXXXXXXXXXXXXQPLDTASSRMQT 140
+Y Y F+ L +K G S+G A+LL P+ +RMQT
Sbjct: 82 YYFYQVFRNRAEATALARKKKGLGDGSVGMFASLLVAAFAGSVNVLMTNPIWVIVTRMQT 141
Query: 141 -------------SAFGKSKGLRATLAE-----GTWLEAFDGLGIS---------LILTC 173
S ++ L A T E +D GI+ LI+
Sbjct: 142 HRKMTKDQTAAPESPSSNAEALVAVEPRPYGTFNTIREVYDEAGITGFWKGVIPTLIMVS 201
Query: 174 NPSIQYTVFDXXXXXXXXXXXXXNAEAGGGSSPVXXXXXXXXXXGAISKSVATILTYPLI 233
NPS+Q+ +++ A GS+ V GA++K AT+ TYPL+
Sbjct: 202 NPSMQFMLYETMLTKLK------KKRALKGSNNVTALETFLL--GAVAKLGATVTTYPLL 253
Query: 234 RCKVMIQAAXXXXXXXXXXXRPGKSKSPKTMLGALHAMWSKEGIPGFFKGLHAQILKTVL 293
K +QA K + K L A+ M EG+ GF+KG+ +I+++VL
Sbjct: 254 VVKSRLQAKQVTTG--------DKRQQYKGTLDAILKMIRYEGLYGFYKGMSTKIVQSVL 305
Query: 294 SSALLLMIKEKISR 307
++A+L MIKE++ +
Sbjct: 306 AAAVLFMIKEELVK 319
>AT5G66380.1 | chr5:26513645-26515533 REVERSE LENGTH=309
Length = 308
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 30/309 (9%)
Query: 8 WESVAEATSGAVGALVSTTVLYPLDTCKTKFQAELQTQPGAHKYRNLSDVFWEAVQKRQI 67
WE+ AT+GAV + ++ LD +T+FQ Y+N + + + +
Sbjct: 7 WEN---ATAGAVAGFATVAAMHSLDVVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLEGL 63
Query: 68 LSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSIGTKANLLXXXXXXXXXXXX 127
LY G I S +S +YF+ Y K+ Y + + +L
Sbjct: 64 RGLYAGFFPAVIGSTVSWGLYFFFYGRAKQRYARGRDDEKLSPALHLASAAEAGALVCLC 123
Query: 128 XQPLDTASSRM-------QTSAF-GKSKGLRATLAEGTWLEAFDGLGISLILTCNPSIQY 179
P+ +R+ QT + G R + E + G+ L+L + +IQ+
Sbjct: 124 TNPIWLVKTRLQLQTPLHQTQPYSGLLDAFRTIVKEEGPRALYKGIVPGLVLVSHGAIQF 183
Query: 180 TVFDXXXXXXXXXXXXXNAEAGGGSSPVXXXXXXXXXXGAISKSVATILTYPLIRCKVMI 239
T ++ S+ G SK A +LTYP + +
Sbjct: 184 TAYEELRKIIVDLKERRRKSE---STDNLLNSADYAALGGSSKVAAVLLTYPFQVIRARL 240
Query: 240 QAAXXXXXXXXXXXRPGKSKSPKTMLGALHAMWSK---EGIPGFFKGLHAQILKTVLSSA 296
Q RP + P+ + +LH + EG+ GF++GL A +LK V +S+
Sbjct: 241 Q------------QRPSTNGIPR-YIDSLHVIRETARYEGLRGFYRGLTANLLKNVPASS 287
Query: 297 LLLMIKEKI 305
+ ++ E +
Sbjct: 288 ITFIVYENV 296
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,377,826
Number of extensions: 163931
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)