BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0392200 Os05g0392200|AK063603
         (168 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0392200  Generic methyltransferase domain containing pr...   322   1e-88
Os08g0517600  SAM (and some other nucleotide) binding motif ...    99   1e-21

>Os05g0392200 Generic methyltransferase domain containing protein
          Length = 168

 Score =  322 bits (824), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/168 (92%), Positives = 156/168 (92%)

Query: 1   MREKHVDIPQLTYFQMDVRDMSLFGDGTFDCVLDKGTLDAMMCGDDAPLGASKMLAEVAR 60
           MREKHVDIPQLTYFQMDVRDMSLFGDGTFDCVLDKGTLDAMMCGDDAPLGASKMLAEVAR
Sbjct: 1   MREKHVDIPQLTYFQMDVRDMSLFGDGTFDCVLDKGTLDAMMCGDDAPLGASKMLAEVAR 60

Query: 61  ILRPGGIYMLITYGCPKERVQLLYQSGSHKKIELYIMPTPGYQLKWSKGVSLAQPIMEEV 120
           ILRPGGIYMLITYGCPKERVQLLYQSGSHKKIELYIMPTPGYQLKWSKGVSLAQPIMEEV
Sbjct: 61  ILRPGGIYMLITYGCPKERVQLLYQSGSHKKIELYIMPTPGYQLKWSKGVSLAQPIMEEV 120

Query: 121 SLTVDGQLPPDYVLKDPESHFIYICKKPDXXXXXXXXXXXXGETITSK 168
           SLTVDGQLPPDYVLKDPESHFIYICKKPD            GETITSK
Sbjct: 121 SLTVDGQLPPDYVLKDPESHFIYICKKPDAANEANSVVANEGETITSK 168



>Os08g0517600 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 197

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 63/83 (75%)

Query: 1   MREKHVDIPQLTYFQMDVRDMSLFGDGTFDCVLDKGTLDAMMCGDDAPLGASKMLAEVAR 60
           M++K+ D P L Y +MDVR+M+ F  G+FD V+DKGTLD++MCG ++   AS+ML EV R
Sbjct: 91  MKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIMCGQNSQENASQMLEEVNR 150

Query: 61  ILRPGGIYMLITYGCPKERVQLL 83
           IL+  G+Y+LITYG P  R++LL
Sbjct: 151 ILKDKGVYILITYGDPSYRLRLL 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,887,856
Number of extensions: 242576
Number of successful extensions: 395
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)