BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0390500 Os05g0390500|AK067160
(536 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0390500 NLI interacting factor domain containing protein 899 0.0
Os02g0796000 296 3e-80
Os11g0521900 Similar to CTD phosphatase-like 3 270 1e-72
Os02g0796100 251 1e-66
>Os05g0390500 NLI interacting factor domain containing protein
Length = 536
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/454 (95%), Positives = 434/454 (95%)
Query: 71 AIVEQSSTKRRRVEDQHRHQAVVMKSDEDTVGSSKDVKIDECPPHPGFFGGLCYRCGKRQ 130
AIVEQSSTKRRRVEDQHRHQAVVMKSDEDTVGSSKDVKIDECPPHPGFFGGLCYRCGKRQ
Sbjct: 71 AIVEQSSTKRRRVEDQHRHQAVVMKSDEDTVGSSKDVKIDECPPHPGFFGGLCYRCGKRQ 130
Query: 131 DEEDVPGVAFGYIHKGLRLGTTEIDRLRGADLKNLLRERKLVLILDLDHTLINSTKLFDL 190
DEEDVPGVAFGYIHKGLRLGTTEIDRLRGADLKNLLRERKLVLILDLDHTLINSTKLFDL
Sbjct: 131 DEEDVPGVAFGYIHKGLRLGTTEIDRLRGADLKNLLRERKLVLILDLDHTLINSTKLFDL 190
Query: 191 SAAENELGIQSAAKEVVPDRSLFTLETMQMLTKLRPFVRRFLKEASDMFEMYIYTMGDKA 250
SAAENELGIQSAAKEVVPDRSLFTLETMQMLTKLRPFVRRFLKEASDMFEMYIYTMGDKA
Sbjct: 191 SAAENELGIQSAAKEVVPDRSLFTLETMQMLTKLRPFVRRFLKEASDMFEMYIYTMGDKA 250
Query: 251 YAIEIAKLLDPDNVYFGSKVISNSDCTQRHQKGLDVVLGDESVAVILDDTEYVWQKHKEN 310
YAIEIAKLLDPDNVYFGSKVISNSDCTQRHQKGLDVVLGDESVAVILDDTEYVWQKHKEN
Sbjct: 251 YAIEIAKLLDPDNVYFGSKVISNSDCTQRHQKGLDVVLGDESVAVILDDTEYVWQKHKEN 310
Query: 311 LILMERYHYFASSCRQFGFGARSLSETMQDERENDGALATILDVLERIHTIFFDPDDQKP 370
LILMERYHYFASSCRQFGFGARSLSETMQDERENDGALATILDVLERIHTIFFDPDDQKP
Sbjct: 311 LILMERYHYFASSCRQFGFGARSLSETMQDERENDGALATILDVLERIHTIFFDPDDQKP 370
Query: 371 LSSRDVRQVIKRVRQEVLQGCKLVFTRVFPLHQRQQDQMIWKMAEQLGAVCCTDVDSTVT 430
LSSRDVRQVIKRVRQEVLQGCKLVFTRVFPLHQRQQDQMIWKMAEQLGAVCCTDVDSTVT
Sbjct: 371 LSSRDVRQVIKRVRQEVLQGCKLVFTRVFPLHQRQQDQMIWKMAEQLGAVCCTDVDSTVT 430
Query: 431 HVVALDLGTEKARWAVSNKKFLVHPRWIEAANFRWQRQQEEDFPVARPKEKGKENAADAP 490
HVVALDLGTEKARWAVSNKKFLVHPRWIEAANFRWQRQQEEDFPVARPKEKGKENAADAP
Sbjct: 431 HVVALDLGTEKARWAVSNKKFLVHPRWIEAANFRWQRQQEEDFPVARPKEKGKENAADAP 490
Query: 491 ISXXXXXXXXXXXXXXXXXXXXVADAGSTKEGSK 524
IS VADAGSTKEGSK
Sbjct: 491 ISKENGDKNAADAANAKKGNENVADAGSTKEGSK 524
>Os02g0796000
Length = 420
Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 159/325 (48%), Positives = 207/325 (63%), Gaps = 13/325 (4%)
Query: 160 ADLKNLLRERKLVLILDLDHTLINSTKLFDLSAAENELGIQSAAKEVVPDRS--LFTLET 217
A+L +LLR RKL+L++DLDHTLINST+ LS E G + DRS LF +
Sbjct: 96 ANLASLLRARKLILVVDLDHTLINSTRFAHLSDDEKANGFTERTGD---DRSRGLFRMGL 152
Query: 218 MQMLTKLRPFVRRFLKEASDMFEMYIYTMGDKAYAIEIAKLLDPDNVYFGSKVISNSDCT 277
+M+TKLRPFV FL+EAS MFEM++YT+G++ YA +AKLLDPD YFG ++IS+ + +
Sbjct: 153 FRMITKLRPFVHEFLREASAMFEMHVYTLGNRNYATAVAKLLDPDGAYFGERIISSGESS 212
Query: 278 QRHQKGLDVVLG-----DESVAVILDDTEYVWQKHKENLILMERYHYFASSCRQFGFGAR 332
Q +K L V G + + VILDDT VW+ +++NLI MERY YFASS +FG R
Sbjct: 213 QPDRKSLGDVFGWAPEMERAAVVILDDTAEVWKGYRDNLIEMERYLYFASSRGKFGIAVR 272
Query: 333 SLSETMQDERENDGALATILDVLERIHTIFFDPDDQKPLSSRDVRQVIKRVRQEVLQGCK 392
SL+E +DE E +GALA L VL R+H FF S DVR+VI++ R+EVL+GC
Sbjct: 273 SLAERNRDESEREGALAVALRVLRRVHGEFFSGSVCSG-SFADVREVIRQARREVLRGCT 331
Query: 393 LVFTRVFPLHQ--RQQDQMIWKMAEQLGAVCCTDVDSTVTHVVALDLGTEKARWAVSNKK 450
+ FT V P R D +W+ AEQLGA C DV VTH VA T KA WA ++ K
Sbjct: 332 VAFTGVIPSGDGGRASDHPVWRRAEQLGATCADDVGEGVTHFVAGKPVTRKALWAQTHGK 391
Query: 451 FLVHPRWIEAANFRWQRQQEEDFPV 475
FLV WI AA+FRW + +E +PV
Sbjct: 392 FLVDTEWINAAHFRWSKPEERMYPV 416
>Os11g0521900 Similar to CTD phosphatase-like 3
Length = 664
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/321 (44%), Positives = 196/321 (61%), Gaps = 13/321 (4%)
Query: 165 LLRERKLVLILDLDHTLINSTKLFDLSAAENELGIQSAAKEVV-PDRSLFTLETMQMLTK 223
+ RKL L+LDLDHTL+NS K ++ E+ + ++ +R LF M M TK
Sbjct: 346 MFAARKLCLVLDLDHTLLNSAKFIEVDHIHGEILRKKEEQDRERAERHLFCFNHMGMWTK 405
Query: 224 LRPFVRRFLKEASDMFEMYIYTMGDKAYAIEIAKLLDPDNVYFGSKVIS--------NSD 275
LRP + FL++AS ++E+++YTMG+K YA E+AK+LDP F +VIS +SD
Sbjct: 406 LRPGIWNFLEKASKLYELHLYTMGNKVYATEMAKVLDPTGTLFAGRVISRGDDGDPFDSD 465
Query: 276 CTQRHQKGLDVVLGDESVAVILDDTEYVWQKHKENLILMERYHYFASSCRQFGFGARSLS 335
K LD VLG ES VI+DD+ VW +K NLI++ERY YF S RQFG SL
Sbjct: 466 ERVPKSKDLDGVLGMESAVVIIDDSVRVWPHNKHNLIVVERYTYFPCSRRQFGLPGPSLL 525
Query: 336 ETMQDERENDGALATILDVLERIHTIFFDPDDQKPLSSRDVRQVIKRVRQEVLQGCKLVF 395
E +DER DG LA+ L V+ERIH FF + L+ DVR ++ +Q +L GC++VF
Sbjct: 526 EIDRDERPEDGTLASSLAVIERIHKNFFSHPN---LNDADVRSILASEQQRILGGCRIVF 582
Query: 396 TRVFPLHQRQQD-QMIWKMAEQLGAVCCTDVDSTVTHVVALDLGTEKARWAVSNKKFLVH 454
+R+FP+ + +W+ AEQ GAVC +D VTHVVA LGT+K WA+S +F+VH
Sbjct: 583 SRIFPVGEANPHMHPLWQTAEQFGAVCTNQIDDRVTHVVANSLGTDKVNWALSTGRFVVH 642
Query: 455 PRWIEAANFRWQRQQEEDFPV 475
P W+EA+ ++R E DF V
Sbjct: 643 PGWVEASALLYRRASELDFAV 663
>Os02g0796100
Length = 377
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/328 (46%), Positives = 186/328 (56%), Gaps = 35/328 (10%)
Query: 162 LKNLLRERKLVLILDLDHTLINSTKLFDLSAAENELGIQSAAKEVVPDRSLFTLETMQ-- 219
L +LLR RKL+L++DLDHTL+NST +D+S E G+ + P R LF L+
Sbjct: 69 LASLLRARKLILVVDLDHTLVNSTADYDISGTEYVNGLAELVTDD-PGRGLFILDHASWF 127
Query: 220 --MLTKLRPFVRRFLKEASDMFEMYIYTMGDKAYAIEIAKLLDPDNVYFGSKVISNSDCT 277
+TKLRPFV FL+EAS M YA +AKLLDPD VYFG ++IS +
Sbjct: 128 SAFITKLRPFVHGFLREASAM-----------DYAAAVAKLLDPDGVYFGERIISRDESP 176
Query: 278 QRHQKGLDVVLGDESV-------AVILDDTEYVWQKHKENLILMERYHYFASSCRQFGFG 330
Q +K LDVV G VILDDT VW+ + +NLI MERYHYFASSCR FG
Sbjct: 177 QPDRKSLDVVFGSAPASAAERAAVVILDDTAEVWEGNSDNLIEMERYHYFASSCRDFGSP 236
Query: 331 ---ARSLSETMQDERENDGALATILDVLERIHTIFFDPDDQKPLSSRDVRQVIKRVRQEV 387
SLSE DE E A L VL R+H FF ++ DVR+VI+R R+EV
Sbjct: 237 WECTHSLSERGVDESER----AAALRVLRRVHAGFFAGGGGSFVA--DVREVIRRTRREV 290
Query: 388 LQGCKLVFTRVFPLHQRQQDQMIWKMAEQLGAVCCTDVDSTVTHVVALDLGTEKARWAVS 447
L GC + FTR +W+ EQLGA C DV VTHVVA + T KA WA
Sbjct: 291 LLGCTVAFTRAI---ASDDHHSVWRRTEQLGATCADDVGPEVTHVVATNPTTFKAVWAQV 347
Query: 448 NKKFLVHPRWIEAANFRWQRQQEEDFPV 475
K LV+P WI AA+FRW + +EE FPV
Sbjct: 348 FGKLLVNPEWINAAHFRWSKPKEEHFPV 375
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,489,191
Number of extensions: 590957
Number of successful extensions: 1435
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1424
Number of HSP's successfully gapped: 4
Length of query: 536
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 430
Effective length of database: 11,501,117
Effective search space: 4945480310
Effective search space used: 4945480310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)