BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0381400 Os05g0381400|AK102039
(173 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0381400 Similar to ABA induced plasma membrane protein... 232 1e-61
Os07g0422100 AWPM-19-like family protein 215 1e-56
Os02g0731500 AWPM-19-like family protein 68 4e-12
>Os05g0381400 Similar to ABA induced plasma membrane protein PM 19
Length = 173
Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/147 (83%), Positives = 123/147 (83%)
Query: 1 MAGVGRTMIAPLLVLNLIMYLIVIGFASWNLNHYINGETNHPGVAGNGATFYFLVFAILA 60
MAGVGRTMIAPLLVLNLIMYLIVIGFASWNLNHYINGETNHPGVAGNGATFYFLVFAILA
Sbjct: 1 MAGVGRTMIAPLLVLNLIMYLIVIGFASWNLNHYINGETNHPGVAGNGATFYFLVFAILA 60
Query: 61 GVVGAASKLAGVHHVRXXXXXXXXXXXXXXXXXXXXXXXXFGLACKEIHIGGYRGWRLRV 120
GVVGAASKLAGVHHVR FGLACKEIHIGGYRGWRLRV
Sbjct: 61 GVVGAASKLAGVHHVRSWGAHSLAAGAASALIAWAITALAFGLACKEIHIGGYRGWRLRV 120
Query: 121 LEAFVIILAFTQLLYVAMLHGGLFSGN 147
LEAFVIILAFTQLLYVAMLHGGLFSGN
Sbjct: 121 LEAFVIILAFTQLLYVAMLHGGLFSGN 147
>Os07g0422100 AWPM-19-like family protein
Length = 173
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/146 (77%), Positives = 118/146 (80%)
Query: 1 MAGVGRTMIAPLLVLNLIMYLIVIGFASWNLNHYINGETNHPGVAGNGATFYFLVFAILA 60
MAGVGR M+APLLVLNLIMYLIVIGFASWNLNH+ING+TN+PGVAGNGATFYFLVFAILA
Sbjct: 1 MAGVGRNMLAPLLVLNLIMYLIVIGFASWNLNHFINGQTNYPGVAGNGATFYFLVFAILA 60
Query: 61 GVVGAASKLAGVHHVRXXXXXXXXXXXXXXXXXXXXXXXXFGLACKEIHIGGYRGWRLRV 120
GVVGAASKLAGVHHVR FGLACKEIHIGG+RGWRLRV
Sbjct: 61 GVVGAASKLAGVHHVRAWRHDSLATNAASSLIAWAITALAFGLACKEIHIGGHRGWRLRV 120
Query: 121 LEAFVIILAFTQLLYVAMLHGGLFSG 146
LEAFVIILAFTQLLYV MLH GLF G
Sbjct: 121 LEAFVIILAFTQLLYVLMLHTGLFGG 146
>Os02g0731500 AWPM-19-like family protein
Length = 132
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 6 RTMIAPLLVLNLIMYLIVIGFASWNLNHYINGETNHPGVAGNGATFYFLVFAILAGVVGA 65
R I PLL +NL+M+ V+G A W+LN +I+GET+H + GN ++ Y LVF+++AGVVG
Sbjct: 8 RRYIGPLLCVNLVMHAAVLGLAGWSLNKFIDGETHH-HLGGNTSSGYLLVFSLMAGVVGV 66
Query: 66 ASKLAGVHHVR 76
S L + HVR
Sbjct: 67 CSVLPRLLHVR 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.331 0.147 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,020,662
Number of extensions: 126435
Number of successful extensions: 314
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 6
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 152 (63.2 bits)