BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0376600 Os05g0376600|AK073218
         (612 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0376600  GCN5-related N-acetyltransferase domain contai...  1239   0.0  
Os01g0939300  BRCT domain containing protein                       68   2e-11

>Os05g0376600 GCN5-related N-acetyltransferase domain containing protein
          Length = 612

 Score = 1239 bits (3207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/612 (97%), Positives = 599/612 (97%)

Query: 1   MGRPRKPAKPXXXXXXXXXXXXXFSIGNCKVEIHGSSLRCQSTEQEEEELTISGPRGAKI 60
           MGRPRKPAKP             FSIGNCKVEIHGSSLRCQSTEQEEEELTISGPRGAKI
Sbjct: 1   MGRPRKPAKPAAAASSSASAAAAFSIGNCKVEIHGSSLRCQSTEQEEEELTISGPRGAKI 60

Query: 61  VVSVDGAKSSSVGDGFDFILLSPSDVNERNKALLQEVLLLYKQELPTMDYAANTGRKSGF 120
           VVSVDGAKSSSVGDGFDFILLSPSDVNERNKALLQEVLLLYKQELPTMDYAANTGRKSGF
Sbjct: 61  VVSVDGAKSSSVGDGFDFILLSPSDVNERNKALLQEVLLLYKQELPTMDYAANTGRKSGF 120

Query: 121 LEKCVTNGKYKTLVLSSTAGYEEVTAALSYQLVPADTQYAEIPLAVVRPPYQRVGIGQLL 180
           LEKCVTNGKYKTLVLSSTAGYEEVTAALSYQLVPADTQYAEIPLAVVRPPYQRVGIGQLL
Sbjct: 121 LEKCVTNGKYKTLVLSSTAGYEEVTAALSYQLVPADTQYAEIPLAVVRPPYQRVGIGQLL 180

Query: 181 YKELSQRLRNVGVTTIFCWADNVSEGFWLKQGFESVGEVDTKGKICRIPVRADIKRALCF 240
           YKELSQRLRNVGVTTIFCWADNVSEGFWLKQGFESVGEVDTKGKICRIPVRADIKRALCF
Sbjct: 181 YKELSQRLRNVGVTTIFCWADNVSEGFWLKQGFESVGEVDTKGKICRIPVRADIKRALCF 240

Query: 241 PGGSMLMVSHLKDLPAPQKSLLSSQQTYQFHTFAPDSISPSDTGTSTPSCEKLLPQTVAC 300
           PGGSMLMVSHLKDLPAPQKSLLSSQQTYQFHTFAPDSISPSDTGTSTPSCEKLLPQTVAC
Sbjct: 241 PGGSMLMVSHLKDLPAPQKSLLSSQQTYQFHTFAPDSISPSDTGTSTPSCEKLLPQTVAC 300

Query: 301 HKVSKTAAVEKNEDFHGTGGCSFSDQQENKRTHETSSSSLKSKRVRCSQHSDHHQDMNQN 360
           HKVSKTAAVEKNEDFHGTGGCSFSDQQENKRTHETSSSSLKSKRVRCSQHSDHHQDMNQN
Sbjct: 301 HKVSKTAAVEKNEDFHGTGGCSFSDQQENKRTHETSSSSLKSKRVRCSQHSDHHQDMNQN 360

Query: 361 EICGKPLSISNTPIHENSVHLMPNELSNPSMVGHVKSKISGDAKANISSNGSPSVMLMNI 420
           EICGKPLSISNTPIHENSVHLMPNELSNPSMVGHVKSKISGDAKANISSNGSPSVMLMNI
Sbjct: 361 EICGKPLSISNTPIHENSVHLMPNELSNPSMVGHVKSKISGDAKANISSNGSPSVMLMNI 420

Query: 421 ADETKKTQLIEVVEMLGGVVTCEGNSCTHVITGKVRMTMNFCIALCSGAWIVSPKWLKES 480
           ADETKKTQLIEVVEMLGGVVTCEGNSCTHVITGKVRMTMNFCIALCSGAWIVSPKWLKES
Sbjct: 421 ADETKKTQLIEVVEMLGGVVTCEGNSCTHVITGKVRMTMNFCIALCSGAWIVSPKWLKES 480

Query: 481 FKKGKFVGEAEYVFQDDEFKVKYKSELRDAVVRAKERPCSLFSGYTFCLTKNIQPSVNVL 540
           FKKGKFVGEAEYVFQDDEFKVKYKSELRDAVVRAKERPCSLFSGYTFCLTKNIQPSVNVL
Sbjct: 481 FKKGKFVGEAEYVFQDDEFKVKYKSELRDAVVRAKERPCSLFSGYTFCLTKNIQPSVNVL 540

Query: 541 SRIIKSSGGKLINKLDDITQPLKTIFLACEEDMELALDAAKRGIKTFSGEWFLSCVMTQE 600
           SRIIKSSGGKLINKLDDITQPLKTIFLACEEDMELALDAAKRGIKTFSGEWFLSCVMTQE
Sbjct: 541 SRIIKSSGGKLINKLDDITQPLKTIFLACEEDMELALDAAKRGIKTFSGEWFLSCVMTQE 600

Query: 601 LDLEAPQFTESL 612
           LDLEAPQFTESL
Sbjct: 601 LDLEAPQFTESL 612



>Os01g0939300 BRCT domain containing protein
          Length = 671

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 447 CTHVITGKVRMTMNFCIALCSGAWIVSPKWLKESFKKGKFVGEAEYVFQDDEFKVKYKSE 506
            TH +  K   T N   A+ +G  +V+P WL+   +   F+ E  Y+ +D    +K + E
Sbjct: 505 ATHFVAEKFARTRNMLEAIATGIPVVTPAWLECCREARSFIDEKRYILRD----IKKEKE 560

Query: 507 LRDAVVRAKERPCS--LFSGYTFCLTKNIQPSVNVLSRIIKSSGGKLI--NKLDDITQP- 561
           L  ++  +  R C   L  G    +T N +PS  +L  ++ ++ GK++  N +  +    
Sbjct: 561 LGFSMPVSLSRACKKPLLEGRRVLITPNAKPSKELLKSLVVTAHGKVLERNAMSKMKNRS 620

Query: 562 -LKTIFLACEEDMELALDAAKRGIKTFSGEWFLSCVMTQELDLE 604
            +    ++CE+D ++ +   K G + F  E  L+ ++TQ+L+ E
Sbjct: 621 LMGAFVISCEQDYKICVPFIKNGFEVFESELVLNGIVTQKLEFE 664



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,577,512
Number of extensions: 853975
Number of successful extensions: 2002
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 2
Length of query: 612
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 505
Effective length of database: 11,448,903
Effective search space: 5781696015
Effective search space used: 5781696015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)