Os01g0939300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRCT domain containing protein.
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Os01g0939300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRCT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.45 | 0.715 | 3.61 | -1.2 | 0.449 | 1.51 | 0.243 | -11.5 | 0.488 | 4.53 | 30.61 | 1514 | -- | -- |
| 236.14 | 0.716 | 3.41 | 0.558 | 0.412 | 0.263 | 0.0953 | -- | 0.38 | 4.79 | 20.24 | 2676 | -- | -- |
| 231.46 | 0.709 | 3.58 | -1 | 0.463 | 1.59 | -- | -11.9 | 0.494 | 4.56 | 31.4 | 1592 | -- | -- |
| 236.11 | 0.716 | 3.42 | 0.559 | 0.42 | 0.281 | -- | -- | 0.385 | 4.54 | 18.8 | 2745 | -- | -- |
| 242.01 | 0.725 | 3.59 | -1.02 | -- | 1.68 | -- | -12.3 | 0.506 | -- | 31.81 | 1683 | -- | -- |
| 238.12 | 0.723 | 3.4 | 0.68 | 0.445 | -- | 0.259 | -- | 0.45 | 4.26 | -- | -- | -- | -- |
| 238.29 | 0.723 | 3.4 | 0.678 | 0.448 | -- | -- | -- | 0.449 | 4.38 | -- | -- | -- | -- |
| 245.53 | 0.73 | 3.42 | 0.544 | -- | 0.355 | -- | -- | 0.378 | -- | 18.9 | 2685 | -- | -- |
| 241.05 | 0.723 | 3.45 | -- | 0.431 | 0.595 | -- | -- | 0.22 | 4.5 | 9.946 | 11191 | -- | -- |
| 249.09 | 0.737 | 3.41 | 0.695 | -- | -- | -- | -- | 0.46 | -- | -- | -- | -- | -- |
| 250.39 | 0.74 | 3.42 | -- | 0.461 | -- | -- | -- | 0.373 | 4.35 | -- | -- | -- | -- |
| 250.86 | 0.738 | 3.46 | -- | -- | 0.544 | -- | -- | 0.231 | -- | 5.484 | 24261 | -- | -- |
| 261.84 | 0.755 | 3.42 | -- | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 223.86 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 223.91 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 224.47 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 4 | 224.72 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 5 | 224.99 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 1 |
| 16 | 226.05 | humidity | 80 | 90 | < th | dose independent | rect. | 24 | 1 |
| 17 | 226.05 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 2 |
| 21 | 226.05 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 22 | 226.05 | humidity | 80 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 33 | 226.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 36 | 226.47 | wind | 3 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 58 | 226.78 | wind | 7 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 59 | 226.78 | wind | 9 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 84 | 227.07 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 100 | 227.12 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 108 | 227.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 118 | 227.26 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 136 | 227.39 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 153 | 227.50 | wind | 3 | 14400 | > th | dose dependent | sin | 1 | NA |
| 156 | 227.53 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 168 | 227.59 | wind | 5 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 186 | 227.65 | wind | 7 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 202 | 227.72 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 209 | 227.76 | wind | 7 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 237 | 227.87 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 260 | 227.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 263 | 227.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 265 | 227.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 274 | 228.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 275 | 228.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 279 | 228.01 | wind | 7 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 318 | 228.11 | humidity | 80 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 337 | 228.16 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 377 | 228.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 397 | 228.31 | humidity | 50 | 90 | < th | dose dependent | rect. | 14 | 3 |
| 403 | 228.33 | wind | 5 | 14400 | < th | dose independent | sin | 1 | NA |
| 415 | 228.37 | humidity | 50 | 90 | < th | dose independent | rect. | 14 | 3 |
| 420 | 228.38 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 448 | 228.41 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 452 | 228.42 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 2 |
| 457 | 228.42 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 459 | 228.42 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 465 | 228.43 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 9 |
| 475 | 228.45 | humidity | 50 | 90 | < th | dose dependent | sin | 12 | NA |
| 485 | 228.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 497 | 228.49 | wind | 5 | 14400 | > th | dose independent | sin | 0 | NA |
| 511 | 228.51 | humidity | 80 | 10 | > th | dose independent | rect. | 4 | 11 |
| 553 | 228.53 | humidity | 80 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 559 | 228.54 | humidity | 80 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 603 | 228.56 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 634 | 228.57 | wind | 9 | 14400 | < th | dose dependent | sin | 1 | NA |
| 639 | 228.58 | humidity | 50 | 90 | < th | dose independent | sin | 12 | NA |
| 642 | 228.58 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 657 | 228.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 661 | 228.61 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 695 | 228.63 | wind | 7 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 736 | 228.67 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 737 | 228.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 738 | 228.67 | humidity | 80 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 772 | 228.70 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 855 | 228.78 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 857 | 228.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 875 | 228.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 895 | 228.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 907 | 228.85 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 916 | 228.85 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 921 | 228.85 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 16 |
| 929 | 228.87 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 944 | 228.87 | wind | 3 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 945 | 228.87 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 968 | 228.90 | humidity | 80 | 43200 | > th | dose independent | sin | 1 | NA |
| 975 | 228.90 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 5 |
| 996 | 228.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 19 |