BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0939300 Os01g0939300|AK101079
(671 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21480.1 | chr3:7567730-7571990 FORWARD LENGTH=1042 224 8e-59
AT4G03130.1 | chr4:1387781-1390646 REVERSE LENGTH=767 212 6e-55
AT2G41450.1 | chr2:17278190-17281637 FORWARD LENGTH=613 74 3e-13
>AT3G21480.1 | chr3:7567730-7571990 FORWARD LENGTH=1042
Length = 1041
Score = 224 bits (572), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 153/227 (67%), Gaps = 6/227 (2%)
Query: 450 FRNEVSPVLQ-----SSRRRRKHMSTVRVLLSQSMGNETLNDQTKILIHFGLSVATTISE 504
FR+ PV + S R+R+ + ++ VL SQ + + Q KIL F +S A+++ E
Sbjct: 791 FRSLTVPVAEPISETKSTRKRRDLGSICVLFSQHLDEDVTKHQKKILARFDISEASSMKE 850
Query: 505 ATHFVAEKFARTRNMLEAIATGIPVVTPAWLECCREARSFIDEKRYILRDIKKEKELGFS 564
ATHF+A+ F RTRNMLEAIA+G PVVT WLE + ++DE YILRD KKEKE F+
Sbjct: 851 ATHFIADNFTRTRNMLEAIASGKPVVTTQWLESIDQVNIYVDEDMYILRDSKKEKEFCFN 910
Query: 565 MPVSLSRACKKPLLEGRRVLITPNAKPSKELLKSLVVTAHGKVLERNAMSKM-KNRSLMG 623
M VSL+RA + PLL+GRRV ITPN KP+ + +LV HG +ER S + +++
Sbjct: 911 MGVSLARARQFPLLQGRRVFITPNTKPALNTITTLVKAVHGLPVERLGRSSLSEDKVPEN 970
Query: 624 AFVISCEQDYKICVPFIKNGFEVFESELVLNGIVTQKLEFERYRLFS 670
V+SCE+D IC+PF++ G EV+ SEL+LNGIVTQ+LE+ERYRLF+
Sbjct: 971 LLVLSCEEDRAICIPFLERGAEVYSSELLLNGIVTQRLEYERYRLFT 1017
>AT4G03130.1 | chr4:1387781-1390646 REVERSE LENGTH=767
Length = 766
Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 148/205 (72%), Gaps = 2/205 (0%)
Query: 463 RRRKHMSTVRVLLSQSMGNETLNDQTKILIHFGLSVATTISEATHFVAEKFARTRNMLEA 522
R+R++++ VRVL SQ++ +ET+ Q KI++ G+S A++ +++THF+A++FARTRNMLEA
Sbjct: 553 RKRRNLAHVRVLFSQNLDDETVKQQKKIMVRLGISPASSSADSTHFIADRFARTRNMLEA 612
Query: 523 IATGIPVVTPAWLECCREARSFIDEKRYILRDIKKEKELGFSMPVSLSRACKKPLLEGRR 582
IA G VVTP WLE C + R IDEK YILRDIKKEK+ GF + SL+RA + PLL+G +
Sbjct: 613 IALGKFVVTPIWLESCAQTRCLIDEKSYILRDIKKEKD-GFCLLTSLARAKQHPLLKGFK 671
Query: 583 VLITPNAKPSKELLKSLVVTAHGKVLERNAMSKMKNRSL-MGAFVISCEQDYKICVPFIK 641
V ITP+ KPS+ ++ LV G+V+E + + ++R+ ++SC++D C+PF+
Sbjct: 672 VCITPSIKPSRGMITDLVKMTQGQVVEASEIIAAEDRNFPEDVLILSCKEDRDFCLPFVN 731
Query: 642 NGFEVFESELVLNGIVTQKLEFERY 666
G +F SEL+LNGIV QKLE+ R+
Sbjct: 732 QGAVIFTSELLLNGIVIQKLEYARF 756
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4 MTSASGCAKLDYLSSQEPGDESQINAIDIVDRLLVEDDIETYQQISIDQTTRAKSASTLG 63
+T++S LD+L SQEPG+ +Q +A+ VD L++ D+ + R KS+ G
Sbjct: 147 ITASSHGPGLDFLDSQEPGESTQADALGFVDHFLMDKDLNLSPVDLPVNSCRRKSSPVSG 206
Query: 64 SDIAQCLAKRARCSSPLKKAGNFDW-VDTPTVDDCRTSIIS 103
+ Q LAKR SP +K FDW D V D +TS ++
Sbjct: 207 AKGCQSLAKRIMSRSPTRKMSVFDWSSDQCDVSDPKTSPVT 247
>AT2G41450.1 | chr2:17278190-17281637 FORWARD LENGTH=613
Length = 612
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 8/180 (4%)
Query: 488 TKILIHFGLSVATTISEATHFVAEKFARTRNMLEAIATGIPVVTPAWL-ECCREARSFID 546
T+++ G +V + +TH V K +T N+ A+ +G +V+P+WL E RE R F +
Sbjct: 430 TEVIRKLGGTVTLDGTTSTHIVTGKVRKTLNLCTALCSGAWIVSPSWLKESVREGR-FAN 488
Query: 547 EKRYILRDIKKEKELGFSMPVSLSRACKKP--LLEGRRVLITPNAKPSKELLKSLVVTAH 604
E +IL D + + + ++ RA +P LL+G + + PN + + +++ +A
Sbjct: 489 EASHILHDEDYQLKYDTDLKSTVLRAKARPNSLLKGYDICVGPNIELPIKTSSAIIKSAG 548
Query: 605 GKVLERNAMSKMKNRSLMGAFVISCEQDYKICVPFIKNGFEVFESELVLNGIVTQKLEFE 664
G V+ + ++K+K S A I CE+D + K G F SE +N ++ Q+L+ +
Sbjct: 549 GNVI--SGVNKVKEAS--KAIYIGCEEDTVGALFAAKKGIWTFSSEWFMNCVMKQQLDLQ 604
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,791,059
Number of extensions: 572082
Number of successful extensions: 1676
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1671
Number of HSP's successfully gapped: 4
Length of query: 671
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 566
Effective length of database: 8,227,889
Effective search space: 4656985174
Effective search space used: 4656985174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)