BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0376300 Os05g0376300|AK068730
(326 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0376300 Conserved hypothetical protein 653 0.0
Os04g0498900 Conserved hypothetical protein 361 e-100
>Os05g0376300 Conserved hypothetical protein
Length = 326
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/326 (96%), Positives = 314/326 (96%)
Query: 1 MTRGEKGMQPKISAFFKRQAPEPETSSGGDTHREGTCGTEVKRPKSCADGKVLNKKRNYA 60
MTRGEKGMQPKISAFFKRQAPEPETSSGGDTHREGTCGTEVKRPKSCADGKVLNKKRNYA
Sbjct: 1 MTRGEKGMQPKISAFFKRQAPEPETSSGGDTHREGTCGTEVKRPKSCADGKVLNKKRNYA 60
Query: 61 QFHLELGQPDFLLHMCSVCGMMYARGNDDDEKAHKAYHKSYFEGVPFKGWRNETVVARSE 120
QFHLELGQPDFLLHMCSVCGMMYARGNDDDEKAHKAYHKSYFEGVPFKGWRNETVVARSE
Sbjct: 61 QFHLELGQPDFLLHMCSVCGMMYARGNDDDEKAHKAYHKSYFEGVPFKGWRNETVVARSE 120
Query: 121 GGDRIILVTDENSCARNSXXXXXXXXXXXXLGFGEGQLLHKLCKVYLFISSQRIVGCLVV 180
GGDRIILVTDENSCARNS LGFGEGQLLHKLCKVYLFISSQRIVGCLVV
Sbjct: 121 GGDRIILVTDENSCARNSKVQEVIKVVQKELGFGEGQLLHKLCKVYLFISSQRIVGCLVV 180
Query: 181 EPIKTAHKVIPGSTEENGSDLPVDKIEPVKTNHTLAFGKISFKREVLKRHDHSDKNKEEY 240
EPIKTAHKVIPGSTEENGSDLPVDKIEPVKTNHTLAFGKISFKREVLKRHDHSDKNKEEY
Sbjct: 181 EPIKTAHKVIPGSTEENGSDLPVDKIEPVKTNHTLAFGKISFKREVLKRHDHSDKNKEEY 240
Query: 241 RDPGAIICEKEDVPAHCGFRAIWVVPSRRRKRIGSQLMDAARKSFLEGETLCISQCAFSP 300
RDPGAIICEKEDVPAHCGFRAIWVVPSRRRKRIGSQLMDAARKSFLEGETLCISQCAFSP
Sbjct: 241 RDPGAIICEKEDVPAHCGFRAIWVVPSRRRKRIGSQLMDAARKSFLEGETLCISQCAFSP 300
Query: 301 PTSSGKALARSYCKTSAFLVYKEQDA 326
PTSSGKALARSYCKTSAFLVYKEQDA
Sbjct: 301 PTSSGKALARSYCKTSAFLVYKEQDA 326
>Os04g0498900 Conserved hypothetical protein
Length = 190
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/176 (98%), Positives = 174/176 (98%)
Query: 151 LGFGEGQLLHKLCKVYLFISSQRIVGCLVVEPIKTAHKVIPGSTEENGSDLPVDKIEPVK 210
LGFGEGQLLHKLCKVYLFISSQRIVGCLV EPIKTAHKVIPGSTEENG+DLPVDKIEPVK
Sbjct: 15 LGFGEGQLLHKLCKVYLFISSQRIVGCLVAEPIKTAHKVIPGSTEENGTDLPVDKIEPVK 74
Query: 211 TNHTLAFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAHCGFRAIWVVPSRRR 270
TNHTL FGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAHCGFRAIWVVPSRRR
Sbjct: 75 TNHTLEFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAHCGFRAIWVVPSRRR 134
Query: 271 KRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTSAFLVYKEQDA 326
KRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTSAFLVYKEQDA
Sbjct: 135 KRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTSAFLVYKEQDA 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,242,821
Number of extensions: 530050
Number of successful extensions: 993
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 225
Effective length of database: 11,762,187
Effective search space: 2646492075
Effective search space used: 2646492075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)