BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0372000 Os05g0372000|AK100218
         (200 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0372000  Ribosomal protein L22/L17 family protein            348   2e-96
Os01g0935900  Conserved hypothetical protein                      196   1e-50

>Os05g0372000 Ribosomal protein L22/L17 family protein
          Length = 200

 Score =  348 bits (893), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 33  LGKTLGYEPTSHLHGAQFLPCWFSTIASNGSHMQKAQETCKPVAGMEHSDALKVMEGTSP 92
           LGKTLGYEPTSHLHGAQFLPCWFSTIASNGSHMQKAQETCKPVAGMEHSDALKVMEGTSP
Sbjct: 33  LGKTLGYEPTSHLHGAQFLPCWFSTIASNGSHMQKAQETCKPVAGMEHSDALKVMEGTSP 92

Query: 93  KVVAFSPLEAAITKPRSSPLTIESSKVKRSEIATLVTFYMIPSLLVSSKNGLATSILVGA 152
           KVVAFSPLEAAITKPRSSPLTIESSKVKRSEIATLVTFYMIPSLLVSSKNGLATSILVGA
Sbjct: 93  KVVAFSPLEAAITKPRSSPLTIESSKVKRSEIATLVTFYMIPSLLVSSKNGLATSILVGA 152

Query: 153 VFHQIYMFHKEIFLDYVHHDITRKWALIYFKLLLLIMAKETIVYFNFI 200
           VFHQIYMFHKEIFLDYVHHDITRKWALIYFKLLLLIMAKETIVYFNFI
Sbjct: 153 VFHQIYMFHKEIFLDYVHHDITRKWALIYFKLLLLIMAKETIVYFNFI 200



>Os01g0935900 Conserved hypothetical protein
          Length = 211

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 117/167 (70%), Gaps = 20/167 (11%)

Query: 33  LGKTLGYEPTSHLHGAQFLPCWFSTIASNGSHMQKAQETCKPVAGMEHSDALKVMEGTSP 92
           L K  GYE TS L G Q LP WFST  SNGS  Q+                    EG + 
Sbjct: 64  LSKIPGYEQTSRLSGTQVLPRWFSTGTSNGSSAQQ--------------------EGATR 103

Query: 93  KVVAFSPLEAAITKPRSSPLTIESSKVKRSEIATLVTFYMIPSLLVSSKNGLATSILVGA 152
           KV+AFSPLEA+I KPR  PLT ES KVK++E+ T  T+YMIP+LL+ SKN ++TS+LV +
Sbjct: 104 KVMAFSPLEASIAKPRKGPLTSESWKVKQTELLTRSTYYMIPTLLLVSKNSISTSLLVAS 163

Query: 153 VFHQIYMFHKEIFLDYVHHDITRKWALIYFKLLLLIMAKETIVYFNF 199
           VFHQ+YMF+KEI LDYVHHDITRKW  IYFK+LL+IMAKET+VYF+ 
Sbjct: 164 VFHQVYMFYKEILLDYVHHDITRKWVFIYFKILLIIMAKETVVYFDL 210



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,967,778
Number of extensions: 169894
Number of successful extensions: 418
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)