Os01g0935900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0935900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.46 | 0.207 | 12.3 | 0.13 | 0.443 | -0.521 | -0.0526 | -1.45 | 0.119 | 1.51 | 11.44 | 328 | -- | -- |
| 20.81 | 0.212 | 12.3 | 0.361 | 0.453 | -0.55 | 0.111 | -- | 0.183 | 1.49 | 10.72 | 350 | -- | -- |
| 19.46 | 0.205 | 12.3 | 0.136 | 0.446 | -0.52 | -- | -1.42 | 0.122 | 1.47 | 11.49 | 337 | -- | -- |
| 20.03 | 0.208 | 12.3 | 0.354 | 0.441 | -0.495 | -- | -- | 0.19 | 1.12 | 21.4 | 342 | -- | -- |
| 27.01 | 0.242 | 12.3 | 0.247 | -- | -0.928 | -- | -1.36 | 0.183 | -- | 10.61 | 76 | -- | -- |
| 24.07 | 0.23 | 12.3 | 0.242 | 0.552 | -- | 0.159 | -- | 0.102 | 2.43 | -- | -- | -- | -- |
| 24.16 | 0.23 | 12.3 | 0.238 | 0.552 | -- | -- | -- | 0.101 | 2.44 | -- | -- | -- | -- |
| 26.31 | 0.239 | 12.3 | 0.418 | -- | -0.815 | -- | -- | 0.244 | -- | 21.4 | 21 | -- | -- |
| 22.88 | 0.223 | 12.3 | -- | 0.453 | -0.384 | -- | -- | 0.127 | 1.46 | 22.69 | 350 | -- | -- |
| 42.14 | 0.303 | 12.3 | 0.261 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 25.65 | 0.237 | 12.3 | -- | 0.557 | -- | -- | -- | 0.0746 | 2.44 | -- | -- | -- | -- |
| 30.55 | 0.257 | 12.3 | -- | -- | -0.729 | -- | -- | 0.173 | -- | 23.1 | 24 | -- | -- |
| 43.94 | 0.309 | 12.3 | -- | -- | -- | -- | -- | 0.0857 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.26 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 2 | 17.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 31 | 17.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 170 | 18.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 224 | 19.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 259 | 19.24 | humidity | 60 | 270 | > th | dose independent | rect. | 5 | 18 |
| 264 | 19.27 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 7 |
| 269 | 19.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 275 | 19.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 336 | 19.40 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 348 | 19.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 353 | 19.43 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 359 | 19.44 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 364 | 19.44 | wind | 5 | 270 | < th | dose independent | rect. | 23 | 19 |
| 369 | 19.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 399 | 19.48 | humidity | 50 | 1440 | > th | dose independent | sin | 12 | NA |
| 403 | 19.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 425 | 19.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 431 | 19.51 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 18 |
| 438 | 19.52 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 452 | 19.53 | humidity | 60 | 270 | > th | dose independent | rect. | 16 | 9 |
| 480 | 19.55 | humidity | 50 | 1440 | < th | dose independent | sin | 11 | NA |
| 481 | 19.55 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 532 | 19.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 15 |
| 546 | 19.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 564 | 19.59 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 597 | 19.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 611 | 19.61 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 691 | 19.65 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 718 | 19.66 | humidity | 60 | 1440 | < th | dose dependent | sin | 12 | NA |
| 792 | 19.69 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 856 | 19.72 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 22 |
| 859 | 19.72 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 871 | 19.72 | wind | 9 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 889 | 19.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 926 | 19.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 944 | 19.74 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 978 | 19.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 992 | 19.76 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 23 |